Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC123904.3-201ENST00000547218 814 ntBASIC2.53□□□□□ -2
CLDN9O95484 AC128657.1-201ENST00000549459 145 ntBASIC2.53□□□□□ -2
CLDN9O95484 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.53□□□□□ -2
CLDN9O95484 AC138761.3-201ENST00000579993 334 ntBASIC2.53□□□□□ -2
CLDN9O95484 MIR3945-201ENST00000581853 98 ntBASIC2.53□□□□□ -2
CLDN9O95484 AC002545.1-201ENST00000592511 181 ntBASIC2.53□□□□□ -2
CLDN9O95484 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.53□□□□□ -2
CLDN9O95484 RPL12P50-201ENST00000603116 116 ntBASIC2.53□□□□□ -2
CLDN9O95484 AL357094.1-201ENST00000603845 844 ntBASIC2.53□□□□□ -2
CLDN9O95484 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.53□□□□□ -2
CLDN9O95484 ZNF519P1-201ENST00000449011 1626 ntBASIC2.53□□□□□ -2
CLDN9O95484 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.53□□□□□ -2.01
CLDN9O95484 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.53□□□□□ -2.01
CLDN9O95484 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.53□□□□□ -2.01
CLDN9O95484 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.52□□□□□ -2.01
CLDN9O95484 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CLDN9O95484 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CLDN9O95484 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CLDN9O95484 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CLDN9O95484 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CLDN9O95484 AL672167.1-206ENST00000356293 943 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 RNU6-853P-201ENST00000364306 107 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 RNU6-1180P-201ENST00000364935 107 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CLDN9O95484 RNU6-432P-201ENST00000384196 109 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AL360182.1-201ENST00000397433 468 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AL109755.1-201ENST00000401791 649 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AL356057.3-201ENST00000402607 340 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.52□□□□□ -2.01
CLDN9O95484 RN7SKP140-201ENST00000411196 284 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 USP9YP20-201ENST00000419224 558 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 UBE2V1P13-201ENST00000436983 439 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.52□□□□□ -2.01
CLDN9O95484 AC105272.1-201ENST00000438604 198 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.52□□□□□ -2.01
CLDN9O95484 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.52□□□□□ -2.01
CLDN9O95484 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.52□□□□□ -2.01
CLDN9O95484 CACYBPP2-201ENST00000453625 678 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 USP9YP10-201ENST00000454868 628 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.52□□□□□ -2.01
CLDN9O95484 AC097462.2-201ENST00000504623 481 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.52□□□□□ -2.01
CLDN9O95484 AC022447.3-201ENST00000506865 495 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AC010587.2-201ENST00000511727 448 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 OR5BM1P-201ENST00000512021 366 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 RNU6-237P-201ENST00000515985 71 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 RNU6-826P-201ENST00000516827 104 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 NRON-201ENST00000517270 370 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AC026241.1-201ENST00000517873 2142 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 MTND2P7-201ENST00000521337 640 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.52□□□□□ -2.01
CLDN9O95484 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CLDN9O95484 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.52□□□□□ -2.01
CLDN9O95484 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.52□□□□□ -2.01
CLDN9O95484 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.52□□□□□ -2.01
CLDN9O95484 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.52□□□□□ -2.01
CLDN9O95484 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.52□□□□□ -2.01
CLDN9O95484 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.52□□□□□ -2.01
CLDN9O95484 MIR4509-3-201ENST00000578671 94 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 MIR5092-201ENST00000583139 88 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 MIR4509-2-201ENST00000583920 94 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.52□□□□□ -2.01
CLDN9O95484 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CLDN9O95484 MIR4509-1-201ENST00000618224 94 ntBASIC2.52□□□□□ -2.01
CLDN9O95484 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.52□□□□□ -2.01
CLDN9O95484 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CLDN9O95484 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
CLDN9O95484 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
CLDN9O95484 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.52□□□□□ -2.01
CLDN9O95484 AC022336.2-201ENST00000568966 2538 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CLDN9O95484 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CLDN9O95484 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CLDN9O95484 VTRNA1-1-201ENST00000363120 99 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 U3.20-201ENST00000390909 217 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AL590084.2-201ENST00000401481 382 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 RPLP0P7-201ENST00000416050 667 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 UBE2FP1-201ENST00000416536 447 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AL139413.1-201ENST00000421309 217 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC2.51□□□□□ -2.01
CLDN9O95484 AC092047.1-201ENST00000424997 240 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 ZNF863P-201ENST00000426746 417 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 GTF2IP20-201ENST00000431663 360 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.51□□□□□ -2.01
CLDN9O95484 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.51□□□□□ -2.01
CLDN9O95484 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.51□□□□□ -2.01
CLDN9O95484 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.51□□□□□ -2.01
CLDN9O95484 AC008571.1-201ENST00000467232 300 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.51□□□□□ -2.01
CLDN9O95484 AC135721.1-201ENST00000497954 479 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 SUMO2P6-201ENST00000505273 288 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AC034159.1-201ENST00000513885 583 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.51□□□□□ -2.01
CLDN9O95484 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.51□□□□□ -2.01
CLDN9O95484 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.51□□□□□ -2.01
CLDN9O95484 AL391261.3-201ENST00000557194 520 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 ELOCP29-201ENST00000588193 334 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AL355877.2-201ENST00000603670 358 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AC019159.1-201ENST00000605094 187 ntBASIC2.51□□□□□ -2.01
CLDN9O95484 AC005014.3-201ENST00000605985 190 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms