Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.2□□□□□ -1.9
LMX1BO60663 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.2□□□□□ -1.9
LMX1BO60663 AC067852.4-201ENST00000590314 478 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AC005261.5-201ENST00000596280 355 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AC068790.3-201ENST00000602988 553 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.2□□□□□ -1.9
LMX1BO60663 AC245517.5-201ENST00000611529 162 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.2□□□□□ -1.9
LMX1BO60663 AC002550.2-201ENST00000621246 394 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AC024940.5-201ENST00000622889 474 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LMX1BO60663 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.2□□□□□ -1.9
LMX1BO60663 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LMX1BO60663 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
LMX1BO60663 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.2□□□□□ -1.9
LMX1BO60663 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.2□□□□□ -1.9
LMX1BO60663 MAPK10-372ENST00000641954 3413 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 MAPK10-373ENST00000641983 6772 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
LMX1BO60663 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
LMX1BO60663 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
LMX1BO60663 OR1S2-201ENST00000302592 978 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 Y_RNA.86-201ENST00000363020 111 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 SNORD3H-201ENST00000384486 214 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 MIR218-2-201ENST00000385006 110 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 RNU6-1009P-201ENST00000390996 107 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 RNU2-9P-201ENST00000410194 145 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 RNU6-1068P-201ENST00000410958 103 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 RHEBP3-201ENST00000411920 351 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 RPL30P2-201ENST00000414021 291 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 MTCO3P12-201ENST00000416718 547 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 SDCBPP3-201ENST00000419629 891 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 ELOCP4-201ENST00000420090 333 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.19□□□□□ -1.9
LMX1BO60663 GPR143P-201ENST00000434155 205 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AC119618.1-201ENST00000434191 222 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.19□□□□□ -1.9
LMX1BO60663 RAC1P7-201ENST00000445367 377 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.19□□□□□ -1.9
LMX1BO60663 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.19□□□□□ -1.9
LMX1BO60663 AC006480.1-201ENST00000449887 378 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.19□□□□□ -1.9
LMX1BO60663 RNU6-261P-201ENST00000459506 102 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 RPS20P20-201ENST00000460498 340 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 RN7SL293P-201ENST00000481765 281 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AC106707.2-201ENST00000484182 374 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.19□□□□□ -1.9
LMX1BO60663 HSPD1P15-201ENST00000505573 1122 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.19□□□□□ -1.9
LMX1BO60663 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.19□□□□□ -1.9
LMX1BO60663 AC025465.4-201ENST00000513422 638 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 RNA5SP164-201ENST00000516533 110 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.19□□□□□ -1.9
LMX1BO60663 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.19□□□□□ -1.9
LMX1BO60663 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.19□□□□□ -1.9
LMX1BO60663 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.19□□□□□ -1.9
LMX1BO60663 AC037471.2-201ENST00000564941 598 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.19□□□□□ -1.9
LMX1BO60663 MIR3200-201ENST00000580767 85 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 MIR5195-201ENST00000583555 115 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.19□□□□□ -1.9
LMX1BO60663 KC877982.1-201ENST00000602313 470 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AC115621.1-201ENST00000604653 858 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.19□□□□□ -1.9
LMX1BO60663 AL590099.1-201ENST00000615276 138 ntBASIC3.19□□□□□ -1.9
LMX1BO60663 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.19□□□□□ -1.9
LMX1BO60663 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.19□□□□□ -1.9
LMX1BO60663 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
LMX1BO60663 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.19□□□□□ -1.9
LMX1BO60663 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
LMX1BO60663 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LMX1BO60663 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.19□□□□□ -1.9
LMX1BO60663 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
LMX1BO60663 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LMX1BO60663 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.18□□□□□ -1.9
LMX1BO60663 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
LMX1BO60663 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
LMX1BO60663 MTND4P29-201ENST00000503122 1372 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
LMX1BO60663 Y_RNA.11-201ENST00000362375 109 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 RNA5SP42-201ENST00000364278 115 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 Y_RNA.263-201ENST00000364659 114 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 RNY3P13-201ENST00000365542 102 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.18□□□□□ -1.9
LMX1BO60663 SNORD51-201ENST00000384320 80 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AL354719.1-201ENST00000406535 843 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.18□□□□□ -1.9
LMX1BO60663 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.18□□□□□ -1.9
LMX1BO60663 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.18□□□□□ -1.9
LMX1BO60663 RPL36AP53-201ENST00000432891 316 ntBASIC3.18□□□□□ -1.9
LMX1BO60663 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms