Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.83□□□□□ -1.96
CLDN3O15551 MTCO3P13-201ENST00000577757 781 ntBASIC2.83□□□□□ -1.96
CLDN3O15551 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.83□□□□□ -1.96
CLDN3O15551 AL355877.2-201ENST00000603670 358 ntBASIC2.83□□□□□ -1.96
CLDN3O15551 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.83□□□□□ -1.96
CLDN3O15551 LRRC77P-213ENST00000637727 880 ntBASIC2.83□□□□□ -1.96
CLDN3O15551 AC022336.2-201ENST00000568966 2538 ntBASIC2.83□□□□□ -1.96
CLDN3O15551 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.83□□□□□ -1.96
CLDN3O15551 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
CLDN3O15551 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CLDN3O15551 FTLP6-201ENST00000355274 422 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 RNU6-853P-201ENST00000364306 107 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 RNU6-1180P-201ENST00000364935 107 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 RNU1-100P-201ENST00000365255 165 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 U3.20-201ENST00000390909 217 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 UBE2V1P2-201ENST00000397758 440 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 MIR320C1-201ENST00000408566 88 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 MTND1P21-201ENST00000412991 285 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 UBE2FP1-201ENST00000416536 447 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AL354692.1-201ENST00000423044 315 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AC092047.1-201ENST00000424997 240 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.82□□□□□ -1.96
CLDN3O15551 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.82□□□□□ -1.96
CLDN3O15551 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.82□□□□□ -1.96
CLDN3O15551 RPL36AP6-201ENST00000435770 321 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 RPL35AP22-201ENST00000436855 335 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.82□□□□□ -1.96
CLDN3O15551 COX7BP2-201ENST00000437976 242 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 ZNF736P1Y-201ENST00000440402 1276 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC2.82□□□□□ -1.96
CLDN3O15551 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.82□□□□□ -1.96
CLDN3O15551 USP9YP10-201ENST00000454868 628 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 SNORA59A-201ENST00000459326 152 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 RN7SL499P-201ENST00000481141 276 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC2.82□□□□□ -1.96
CLDN3O15551 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.82□□□□□ -1.96
CLDN3O15551 AC093281.2-201ENST00000510153 597 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 RNU4-29P-201ENST00000515943 174 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AC026241.1-201ENST00000517873 2142 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.82□□□□□ -1.96
CLDN3O15551 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.82□□□□□ -1.96
CLDN3O15551 AC087276.1-201ENST00000529659 480 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AC243972.3-201ENST00000539655 198 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.82□□□□□ -1.96
CLDN3O15551 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.82□□□□□ -1.96
CLDN3O15551 AC010546.1-201ENST00000569391 485 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 MIR4672-201ENST00000583126 81 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AF038458.1-201ENST00000588406 262 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.82□□□□□ -1.96
CLDN3O15551 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.82□□□□□ -1.96
CLDN3O15551 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.82□□□□□ -1.96
CLDN3O15551 AL133445.2-201ENST00000611191 527 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 TUG1_2.1-201ENST00000614234 87 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CLDN3O15551 ZNF519P1-201ENST00000449011 1626 ntBASIC2.82□□□□□ -1.96
CLDN3O15551 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.81□□□□□ -1.96
CLDN3O15551 RNA5SP68-201ENST00000363885 119 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 RNU1-109P-201ENST00000383960 147 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 RNU6-754P-201ENST00000391166 107 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 AL109755.1-201ENST00000401791 649 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.81□□□□□ -1.96
CLDN3O15551 AC083875.1-201ENST00000419509 405 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 AC092648.1-201ENST00000425870 423 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.81□□□□□ -1.96
CLDN3O15551 ZNF863P-201ENST00000426746 417 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 AC236972.1-201ENST00000433225 199 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 RPL39P40-201ENST00000445481 146 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 PTENP1-201ENST00000447117 1215 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.81□□□□□ -1.96
CLDN3O15551 AC135721.1-201ENST00000497954 479 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 MTND3P3-201ENST00000505004 126 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.81□□□□□ -1.96
CLDN3O15551 NRON-201ENST00000517270 370 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.81□□□□□ -1.96
CLDN3O15551 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.81□□□□□ -1.96
CLDN3O15551 AL161729.4-201ENST00000604650 476 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 SDR42E1P2-201ENST00000614861 481 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 MIR6817-201ENST00000615588 66 ntBASIC2.81□□□□□ -1.96
CLDN3O15551 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
CLDN3O15551 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLDN3O15551 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.8□□□□□ -1.96
CLDN3O15551 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.8□□□□□ -1.96
CLDN3O15551 RNU6-217P-201ENST00000384164 104 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 AL590084.2-201ENST00000401481 382 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 BX682237.1-201ENST00000415016 335 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.8□□□□□ -1.96
CLDN3O15551 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.8□□□□□ -1.96
CLDN3O15551 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 WASF1P1-201ENST00000447560 1131 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 ST13P20-201ENST00000447996 1065 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 RPS15AP27-201ENST00000449183 343 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 UBE2DNL-203ENST00000474922 222 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 AC126389.1-201ENST00000477436 290 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 RPL31P41-201ENST00000477967 372 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.8□□□□□ -1.96
CLDN3O15551 SUMO2P6-201ENST00000505273 288 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms