Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC1.59□□□□□ -2.15
HMGB3O15347 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC1.58□□□□□ -2.16
HMGB3O15347 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.58□□□□□ -2.16
HMGB3O15347 AC008555.8-201ENST00000623602 2168 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HMGB3O15347 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
HMGB3O15347 RNU1-91P-201ENST00000364746 163 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 OR1L1-202ENST00000373686 1083 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 RNU6-741P-201ENST00000383889 107 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 U8.14-201ENST00000390843 143 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 RNA5SP171-201ENST00000391071 115 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AL356131.1-201ENST00000405826 414 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AL356967.1-201ENST00000406305 431 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AC007098.1-201ENST00000420122 367 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 RPL31P63-201ENST00000422565 375 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.58□□□□□ -2.16
HMGB3O15347 AL590623.1-201ENST00000427864 105 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.58□□□□□ -2.16
HMGB3O15347 CBWD4P-201ENST00000445695 655 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 RPL23AP3-201ENST00000453844 468 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.58□□□□□ -2.16
HMGB3O15347 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.58□□□□□ -2.16
HMGB3O15347 RPL7P18-201ENST00000478965 734 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 CAB39P1-201ENST00000502277 460 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 HSPA8P13-201ENST00000523715 472 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 NIFKP8-201ENST00000560500 874 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.58□□□□□ -2.16
HMGB3O15347 MIR4529-201ENST00000578110 78 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AC090897.2-201ENST00000581715 130 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AC024220.1-201ENST00000603675 484 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AL033523.1-201ENST00000605153 153 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 FTX_3.1-201ENST00000610451 147 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 DUXAP10-204ENST00000612052 616 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AC010678.1-201ENST00000614118 713 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AC005296.1-201ENST00000616145 209 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AC006213.5-201ENST00000619673 288 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 AC004777.1-201ENST00000624317 287 ntBASIC1.58□□□□□ -2.16
HMGB3O15347 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
HMGB3O15347 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
HMGB3O15347 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
HMGB3O15347 RNU6-7-201ENST00000364784 107 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 RNU6-234P-201ENST00000365229 104 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 RNU6-8-201ENST00000365467 107 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
HMGB3O15347 MIR218-1-201ENST00000384999 110 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 SNORA48.2-201ENST00000390926 124 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 SNORA11.4-201ENST00000408823 129 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 RN7SKP158-201ENST00000410453 326 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 RNA5SP184-201ENST00000411071 108 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AL135786.1-201ENST00000415892 214 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 NUP35P1-201ENST00000422734 947 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGB3O15347 MTCYBP45-201ENST00000435243 565 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AC002542.1-201ENST00000440683 193 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGB3O15347 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGB3O15347 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.57□□□□□ -2.16
HMGB3O15347 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGB3O15347 AC055855.1-201ENST00000489563 579 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 RPS29P20-201ENST00000489592 171 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGB3O15347 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGB3O15347 AP005597.4-201ENST00000526762 229 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
HMGB3O15347 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC1.57□□□□□ -2.16
HMGB3O15347 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.57□□□□□ -2.16
HMGB3O15347 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.57□□□□□ -2.16
HMGB3O15347 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGB3O15347 LARP7P2-201ENST00000575306 125 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 DUXAP11-201ENST00000603858 526 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AC005034.5-201ENST00000604219 466 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 Y_RNA.783-201ENST00000613546 102 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 U4atac.1-201ENST00000618345 95 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AL512506.2-201ENST00000624472 458 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AC006386.2-201ENST00000624491 75 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AC012005.1-201ENST00000624575 75 ntBASIC1.57□□□□□ -2.16
HMGB3O15347 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.57□□□□□ -2.16
HMGB3O15347 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
HMGB3O15347 DBF4P1-201ENST00000412976 1892 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HMGB3O15347 SNORD56.4-201ENST00000363883 71 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HMGB3O15347 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
HMGB3O15347 MIR888-201ENST00000401186 77 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 RNA5SP489-201ENST00000410986 109 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 AL139156.1-201ENST00000412785 841 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.56□□□□□ -2.16
HMGB3O15347 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.56□□□□□ -2.16
HMGB3O15347 HMGN2P19-201ENST00000425149 265 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 RPS3AP44-201ENST00000425466 790 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 ZNF863P-201ENST00000426746 417 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 AL353689.1-201ENST00000438895 199 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.56□□□□□ -2.16
HMGB3O15347 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.56□□□□□ -2.16
HMGB3O15347 TPT1P14-201ENST00000448018 505 ntBASIC1.56□□□□□ -2.16
HMGB3O15347 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC1.56□□□□□ -2.16
HMGB3O15347 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.56□□□□□ -2.16
HMGB3O15347 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.56□□□□□ -2.16
HMGB3O15347 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.56□□□□□ -2.16
HMGB3O15347 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms