Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.71□□□□□ -1.5
CHMP3Q9Y3E7 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CHMP3Q9Y3E7 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 Y_RNA.2-201ENST00000362330 96 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 RNU6-434P-201ENST00000384376 107 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 Z99755.1-201ENST00000414048 380 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 RPS24P13-201ENST00000442520 397 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 BX276092.4-201ENST00000452056 248 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 CYCSP34-201ENST00000458172 304 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 SNORD5.1-201ENST00000458800 75 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 SLC25A15P5-201ENST00000508033 253 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 RN7SKP277-201ENST00000516895 283 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 GNAI2P1-201ENST00000541815 315 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AC025423.5-201ENST00000550230 219 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AL161423.1-201ENST00000613700 262 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AL731566.2-201ENST00000618971 317 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AC110801.1-201ENST00000623590 212 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 AC009951.1-201ENST00000623674 2614 ntBASIC5.7□□□□□ -1.5
CHMP3Q9Y3E7 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 SAGE4P-201ENST00000442271 3381 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 SNORA23-201ENST00000365128 182 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RNU1-115P-201ENST00000365329 160 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 Y_RNA.556-201ENST00000384677 113 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RNU6ATAC23P-201ENST00000408448 123 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RNU4-65P-201ENST00000410473 140 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 EIF4A1P3-201ENST00000411521 244 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 ELOCP19-201ENST00000411919 318 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AC011933.1-201ENST00000413334 321 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RPS23P10-201ENST00000416185 486 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RPL12P34-201ENST00000424532 479 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AC091390.1-201ENST00000433904 331 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 MTND2P29-201ENST00000438595 412 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RPL21P2-201ENST00000440049 481 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AL162389.1-201ENST00000449233 177 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RNA5SP103-201ENST00000459503 118 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 HMGB1P25-201ENST00000468402 607 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 VN1R105P-201ENST00000486595 910 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AC026801.2-201ENST00000515352 425 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RNU4-77P-201ENST00000516692 156 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AC026371.1-201ENST00000551867 419 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 MIR3936-201ENST00000584304 110 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RN7SL435P-201ENST00000584418 282 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AC020634.1-201ENST00000608701 549 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 AL731566.1-201ENST00000620490 1937 ntBASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP3Q9Y3E7 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 SNORD62.1-201ENST00000362541 86 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 RHOT1P2-201ENST00000366423 333 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 RNU6-101P-201ENST00000410323 104 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 CEP57L1P1-201ENST00000430943 1201 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 RPL23AP69-201ENST00000431134 458 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 MTCO3P45-201ENST00000443036 613 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 RPS24P6-201ENST00000452670 400 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 ISCUP1-201ENST00000454451 448 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 RN7SL385P-201ENST00000468873 276 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 AC011276.1-201ENST00000469688 323 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 Y_RNA.689-201ENST00000516589 107 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms