Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU7-63P-201ENST00000459054 62 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL133162.1-201ENST00000463228 453 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC084357.1-201ENST00000473404 255 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 VN1R105P-201ENST00000486595 910 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC117522.1-201ENST00000509821 380 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 RNU6-579P-201ENST00000516879 102 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 MIR2116-201ENST00000517221 80 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AP006245.1-201ENST00000522549 120 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC093012.1-202ENST00000549403 582 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 ARL2BPP2-201ENST00000550907 489 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC125611.2-201ENST00000551907 647 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 NCAPGP2-201ENST00000557911 754 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC055876.1-202ENST00000567053 138 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL670379.6-201ENST00000603753 252 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL670379.11-201ENST00000604059 253 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC008162.1-201ENST00000604718 254 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AC006077.1-201ENST00000604746 343 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL670379.1-201ENST00000604752 252 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL670379.5-201ENST00000605253 252 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL670379.12-201ENST00000605291 253 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL670379.8-201ENST00000605353 252 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL670379.7-201ENST00000605823 252 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL020991.1-201ENST00000612314 373 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 AL353746.1-201ENST00000566293 6881 ntBASIC4.28□□□□□ -1.72
LIMCH1Q9UPQ0 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 SNORA23-201ENST00000365128 182 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 RNA5SP235-201ENST00000365411 114 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 Y_RNA.367-201ENST00000365544 101 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 Y_RNA.390-201ENST00000383932 102 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 RNA5SP118-201ENST00000410385 109 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 SSXP9-201ENST00000417503 292 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC245054.1-201ENST00000420944 258 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 SNRPGP5-201ENST00000456003 220 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 RN7SL385P-201ENST00000468873 276 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC116562.3-201ENST00000506136 177 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC026784.1-201ENST00000507986 352 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC068587.5-201ENST00000528506 175 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC034105.3-201ENST00000565294 442 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 RN7SL703P-201ENST00000578485 302 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 MIR4644-201ENST00000579929 84 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 MIR4697-201ENST00000582977 78 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AF038458.1-201ENST00000588406 262 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC006116.10-201ENST00000591836 581 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 SNRPGP15-201ENST00000600149 222 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC010591.1-201ENST00000603941 649 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AL022099.1-201ENST00000604551 712 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AC015967.1-201ENST00000619893 476 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 AL353748.2-201ENST00000622148 471 ntBASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIMCH1Q9UPQ0 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RNY3P3-201ENST00000363816 102 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 SNORA69-201ENST00000383895 132 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-641P-201ENST00000384006 107 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC068050.1-201ENST00000394891 380 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AL136116.1-201ENST00000403591 381 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 TXNP7-201ENST00000406296 293 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RPS3AP24-201ENST00000407896 734 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RNU2-36P-201ENST00000410361 191 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RAC1P6-201ENST00000423911 575 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RPS15AP9-201ENST00000439856 381 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RPS29P25-201ENST00000481709 171 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 VN1R104P-201ENST00000505115 1009 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 PCBP2P3-201ENST00000509726 843 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-1092P-201ENST00000516955 87 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-835P-201ENST00000516974 104 ntBASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.26□□□□□ -1.73
LIMCH1Q9UPQ0 OR8R1P-201ENST00000543943 764 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms