Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 ZNF826P-207ENST00000622273 1910 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC010680.1-201ENST00000590024 3590 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AL079305.1-201ENST00000623159 3008 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS28Q9UK41 RNA5SP383-201ENST00000362934 120 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 RNU6-799P-201ENST00000363567 107 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 RNY3P13-201ENST00000365542 102 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS28Q9UK41 RNU6-198P-201ENST00000384258 104 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 U3.19-201ENST00000390893 196 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 SNORA48.8-201ENST00000391324 134 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 Y_RNA.608-201ENST00000410647 95 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC245291.1-201ENST00000419501 328 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 ZNF863P-201ENST00000426746 417 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC005300.1-201ENST00000428401 373 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 RPL21P13-201ENST00000488305 481 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AL160314.1-201ENST00000490836 438 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 PHBP14-201ENST00000512887 367 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC015917.1-201ENST00000579654 510 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AL133393.1-201ENST00000603277 287 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC008147.4-201ENST00000617570 1204 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC068057.2-201ENST00000624047 895 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS28Q9UK41 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
VPS28Q9UK41 AC092104.1-201ENST00000497346 1441 ntBASIC3.42□□□□□ -1.86
VPS28Q9UK41 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS28Q9UK41 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS28Q9UK41 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS28Q9UK41 CD24P4-201ENST00000382840 243 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 RNU6-217P-201ENST00000384164 104 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 SAR1AP2-201ENST00000392696 594 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 RNA5SP120-201ENST00000410900 112 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS28Q9UK41 MTATP6P30-201ENST00000443540 664 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS28Q9UK41 USP9YP12-201ENST00000450481 570 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC068724.1-201ENST00000487100 792 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC114797.1-201ENST00000514003 728 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC068657.1-201ENST00000520807 306 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC005476.1-201ENST00000554427 397 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC109446.2-201ENST00000567872 497 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS28Q9UK41 NUTF2P8-201ENST00000604593 363 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC138749.5-201ENST00000611461 208 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC116165.2-201ENST00000616705 206 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AL356321.1-201ENST00000621360 228 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC091931.1-201ENST00000623488 728 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 AC007496.3-201ENST00000624987 3443 ntBASIC3.41□□□□□ -1.86
VPS28Q9UK41 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS28Q9UK41 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS28Q9UK41 AC017071.1-201ENST00000564407 2204 ntBASIC3.4□□□□□ -1.86
VPS28Q9UK41 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.4□□□□□ -1.86
VPS28Q9UK41 MTND4P4-201ENST00000439033 1366 ntBASIC3.4□□□□□ -1.86
VPS28Q9UK41 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
VPS28Q9UK41 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS28Q9UK41 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 RNY4P16-201ENST00000364768 94 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 FCF1P10-201ENST00000407590 479 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AL356968.1-201ENST00000416622 474 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 MTATP6P17-201ENST00000431030 672 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 FCF1P1-201ENST00000432690 571 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 HMGB3P11-201ENST00000440127 604 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC093156.1-201ENST00000440382 670 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 TRIM60P18-201ENST00000441518 828 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 UBE2D3P4-201ENST00000441973 436 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 SSXP1-201ENST00000453640 473 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 BX510359.1-201ENST00000456973 237 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 HMGN1P18-201ENST00000457642 277 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 CENPBD1P1-201ENST00000464061 469 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 MTND4LP3-201ENST00000468320 276 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms