Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 RNA5SP39-201ENST00000411245 120 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 POLHP1-201ENST00000411806 470 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 NDUFB4P5-201ENST00000415445 361 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 TMSB10P2-201ENST00000416049 131 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 USP9YP7-201ENST00000436723 430 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC020550.1-201ENST00000447385 163 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 USP9YP32-201ENST00000452432 430 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 ANP32BP2-201ENST00000454525 545 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 RPL21P126-201ENST00000470049 478 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC104164.2-201ENST00000496953 495 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 RNA5SP73-201ENST00000516744 108 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 NARSP2-201ENST00000518524 679 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 IFITM8P-201ENST00000522529 394 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 ERHP1-201ENST00000523006 310 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AP006587.4-201ENST00000526053 529 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AP006289.1-201ENST00000538089 277 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC006064.5-201ENST00000541782 248 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 OR11H5P-201ENST00000554039 926 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC026464.5-201ENST00000562497 722 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 MIR4443-201ENST00000585052 53 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC023043.4-201ENST00000612081 449 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AC103705.1-201ENST00000619013 241 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 MIR6730-201ENST00000622213 67 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 MIR4727-201ENST00000622232 55 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 AL445363.3-201ENST00000623080 671 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.85□□□□□ -1.79
VSX1Q9NZR4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.85□□□□□ -1.79
VSX1Q9NZR4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RNU6-173P-201ENST00000364215 104 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RNA5SP175-201ENST00000364275 119 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 Y_RNA.301-201ENST00000364990 103 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RHOT1P2-201ENST00000366423 333 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AL138878.1-201ENST00000405131 347 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AL590004.1-201ENST00000405321 300 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 SNORA11F-201ENST00000408237 128 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 MTCO2P27-201ENST00000420740 428 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AC244098.2-201ENST00000422068 99 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AL356387.2-201ENST00000422272 243 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RPEP3-201ENST00000425462 676 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 HMGB1P27-201ENST00000431429 603 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AC007677.1-201ENST00000445757 515 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 ARL2BPP10-201ENST00000446487 531 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AC008264.1-201ENST00000447612 367 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RPS29P33-201ENST00000456717 146 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RPL37P6-201ENST00000460682 294 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RPS27AP13-201ENST00000498403 237 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 PARP4P3-201ENST00000510265 317 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 NDUFB4P9-201ENST00000511646 388 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RPL39P5-202ENST00000512505 151 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 GMPSP1-201ENST00000514075 579 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 RN7SKP60-201ENST00000516985 239 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AC093027.1-201ENST00000546698 429 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AC005255.1-201ENST00000593748 216 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AC005034.5-201ENST00000604219 466 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 Z82243.1-201ENST00000609432 473 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AC009570.1-201ENST00000609599 745 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 uc_338.15-201ENST00000615470 191 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 uc_338.13-201ENST00000618243 179 ntBASIC3.84□□□□□ -1.79
VSX1Q9NZR4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.84□□□□□ -1.79
VSX1Q9NZR4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
VSX1Q9NZR4 MFSD8-216ENST00000641147 4009 ntBASIC3.84□□□□□ -1.8
VSX1Q9NZR4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
VSX1Q9NZR4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 FRG1CP-201ENST00000358464 769 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.67-201ENST00000362870 100 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 RNU6-1074P-201ENST00000383995 104 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 RNU6-190P-201ENST00000384154 102 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 RNU6-434P-201ENST00000384376 107 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 MIR129-1-201ENST00000384972 72 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms