Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC007954.1-201ENST00000554198 494 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AL133153.1-201ENST00000557756 303 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC005951.2-201ENST00000576282 495 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC011471.1-201ENST00000585766 187 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AF038458.1-201ENST00000588406 262 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC068790.3-201ENST00000602988 553 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC079089.3-201ENST00000603094 673 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 RPL23AP88-201ENST00000605759 454 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC007038.2-201ENST00000608095 740 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC069234.5-201ENST00000611056 416 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC010133.1-201ENST00000615809 842 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC131159.1-201ENST00000621854 213 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AL161431.1-201ENST00000618966 4205 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 GNG5P1-201ENST00000255500 204 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 RNU6-500P-201ENST00000362349 107 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 SNORD56.5-201ENST00000364281 72 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 RNU1-39P-201ENST00000383897 165 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 RNU1-109P-201ENST00000383960 147 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 RNU5A-2P-201ENST00000384337 116 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 FO393413.1-201ENST00000402892 195 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 RN7SKP140-201ENST00000411196 284 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC011233.1-201ENST00000422812 283 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 MTCO3P45-201ENST00000443036 613 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 SETP11-201ENST00000473027 690 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 RPS27AP9-201ENST00000477681 438 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 RPL23AP41-201ENST00000484754 458 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 MTCYBP35-201ENST00000503630 1137 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 TTC39CP1-201ENST00000512513 755 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 Y_RNA.717-201ENST00000517106 92 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 NRON-201ENST00000517270 370 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 HIGD1AP1-201ENST00000550979 275 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 MIR4276-201ENST00000584832 70 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 TPMTP1-201ENST00000592307 737 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AL606834.2-201ENST00000602954 668 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 PRELID3BP8-201ENST00000604148 295 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC004696.1-201ENST00000614345 607 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 SDR42E1P2-201ENST00000614861 481 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 MIR6733-201ENST00000635723 61 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 LRRC77P-213ENST00000637727 880 ntBASIC2.88□□□□□ -1.95
DDX28Q9NUL7 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
DDX28Q9NUL7 AC007785.2-201ENST00000598627 1916 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 RNA5SP252-201ENST00000391131 119 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 RPL37P21-201ENST00000435890 276 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC006028.1-201ENST00000438379 402 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 RPL39P40-201ENST00000445481 146 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 CBWD4P-201ENST00000445695 655 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 ELOCP30-201ENST00000447108 299 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC009901.1-201ENST00000506703 541 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AP000907.2-201ENST00000530827 353 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 LRRC34P1-201ENST00000542742 915 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 GLUD1P4-201ENST00000590914 418 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC020895.1-201ENST00000595362 272 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AP000403.1-201ENST00000603349 851 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 NUTF2P8-201ENST00000604593 363 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC019159.1-201ENST00000605094 187 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC073657.2-201ENST00000605661 303 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC018638.7-201ENST00000605836 1114 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AL355816.2-201ENST00000610049 647 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AL157817.1-201ENST00000614264 790 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms