Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1□□□□□ -2.25
VPS13AQ96RL7 AP000949.1-201ENST00000438328 629 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC1□□□□□ -2.25
VPS13AQ96RL7 SETP2-201ENST00000553886 926 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 AC025918.2-201ENST00000558683 763 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 MIR4711-201ENST00000578274 70 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 AC006270.3-201ENST00000605967 1036 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 AC112503.2-201ENST00000609005 552 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 EFTUD1P2-201ENST00000514817 1603 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 OR1L1-202ENST00000373686 1083 ntBASIC0.99□□□□□ -2.25
VPS13AQ96RL7 RNU1-109P-201ENST00000383960 147 ntBASIC0.99□□□□□ -2.25
VPS13AQ96RL7 SNORA31.23-201ENST00000517219 133 ntBASIC0.99□□□□□ -2.25
VPS13AQ96RL7 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 OOSP1P2-201ENST00000579644 351 ntBASIC0.99□□□□□ -2.25
VPS13AQ96RL7 MTND4P12-201ENST00000498999 1377 ntBASIC0.99□□□□□ -2.25
VPS13AQ96RL7 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 FCF1P2-201ENST00000415284 583 ntBASIC0.99□□□□□ -2.25
VPS13AQ96RL7 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC0.99□□□□□ -2.25
VPS13AQ96RL7 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 MTND2P9-201ENST00000422293 931 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 MORF4L1P7-201ENST00000426038 703 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.98□□□□□ -2.25
VPS13AQ96RL7 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.98□□□□□ -2.25
VPS13AQ96RL7 MIR4723-201ENST00000585070 81 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 PABPC1P7-201ENST00000413177 1513 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
VPS13AQ96RL7 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.98□□□□□ -2.25
VPS13AQ96RL7 PGBD4P6-201ENST00000421501 610 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC0.98□□□□□ -2.25
VPS13AQ96RL7 RNA5SP233-201ENST00000459153 113 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 FO393415.2-201ENST00000480085 343 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 AC104806.1-201ENST00000508720 308 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC0.98□□□□□ -2.25
VPS13AQ96RL7 ZNF965P-201ENST00000432501 817 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 AC093852.1-201ENST00000503587 266 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 AC012443.1-201ENST00000605605 231 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 AC090617.7-201ENST00000623952 126 ntBASIC0.98□□□□□ -2.25
VPS13AQ96RL7 RPL27AP8-201ENST00000424277 446 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 TRAPPC2P5-201ENST00000426293 308 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AC016691.1-201ENST00000441321 413 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 SNX5P1-201ENST00000505757 1041 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AC090897.2-201ENST00000581715 130 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 MIR6857-201ENST00000613267 93 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AP003499.2-201ENST00000624100 483 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 Y_RNA.412-201ENST00000384001 104 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AC233728.2-201ENST00000425348 757 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC0.97□□□□□ -2.25
VPS13AQ96RL7 OR6K5P-201ENST00000447050 945 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 RPL7P18-201ENST00000478965 734 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 RPL21P93-201ENST00000480465 489 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AC233702.1-201ENST00000482905 502 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AC093591.1-201ENST00000491435 481 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AC104229.1-201ENST00000561364 255 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AC048347.1-201ENST00000624621 427 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC0.97□□□□□ -2.25
VPS13AQ96RL7 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC0.97□□□□□ -2.25
VPS13AQ96RL7 AC008669.1-201ENST00000565823 2178 ntBASIC0.97□□□□□ -2.25
VPS13AQ96RL7 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 Y_RNA.136-201ENST00000363444 102 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 RPL31P63-201ENST00000422565 375 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 GDI2P2-201ENST00000445131 608 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 AC012170.1-201ENST00000495139 359 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 OR5AQ1P-202ENST00000641257 1534 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 ZNF37BP-203ENST00000452306 1352 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 RN7SKP51-201ENST00000410781 304 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 RPS23P3-201ENST00000470993 430 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 RNA5SP193-201ENST00000410353 107 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 AC004854.1-201ENST00000440356 349 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC0.96□□□□□ -2.26
VPS13AQ96RL7 CYCSP23-201ENST00000519781 313 ntBASIC0.96□□□□□ -2.26
VPS13AQ96RL7 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
VPS13AQ96RL7 RNU2-40P-201ENST00000410833 196 ntBASIC0.95□□□□□ -2.26
VPS13AQ96RL7 OR51A5P-201ENST00000415429 942 ntBASIC0.95□□□□□ -2.26
VPS13AQ96RL7 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC0.95□□□□□ -2.26
VPS13AQ96RL7 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC0.95□□□□□ -2.26
VPS13AQ96RL7 AC114322.1-201ENST00000506771 926 ntBASIC0.95□□□□□ -2.26
VPS13AQ96RL7 APOOP3-201ENST00000536787 586 ntBASIC0.95□□□□□ -2.26
VPS13AQ96RL7 OR6C7P-201ENST00000547875 934 ntBASIC0.95□□□□□ -2.26
VPS13AQ96RL7 RNU6-234P-201ENST00000365229 104 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms