Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-757P-201ENST00000410334 100 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC106883.1-201ENST00000418805 562 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC009296.1-201ENST00000443146 155 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 TPT1P14-201ENST00000448018 505 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC034222.1-201ENST00000494052 532 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 RNA5SP291-201ENST00000517222 105 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC010546.1-201ENST00000569391 485 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC023043.3-201ENST00000593113 385 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AL161729.4-201ENST00000604650 476 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AL592221.1-201ENST00000605266 382 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AL136363.1-201ENST00000605349 337 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC024560.3-201ENST00000608482 349 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC090115.4-201ENST00000609970 188 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 SDR42E1P2-201ENST00000614861 481 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 PCMTD1P7-201ENST00000634506 357 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 AC092593.1-201ENST00000515413 1815 ntBASIC3.11□□□□□ -1.91
CCDC43Q96MW1 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC43Q96MW1 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 FTLP6-201ENST00000355274 422 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 RNU6-223P-201ENST00000362830 107 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 RNU6-140P-201ENST00000384566 108 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 MIR767-201ENST00000390228 109 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 RNU6-193P-201ENST00000410977 107 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 PIGPP2-201ENST00000411569 458 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AL592148.1-201ENST00000413568 445 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AL451054.2-201ENST00000420896 202 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC084290.1-201ENST00000434995 374 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AL513043.1-201ENST00000439124 535 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 DUXAP8-207ENST00000456786 622 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 RN7SL499P-201ENST00000481141 276 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 RNA5SP216-201ENST00000516111 123 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC007536.1-201ENST00000533382 349 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 GTF3AP2-201ENST00000557014 266 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 CYCSP39-201ENST00000565821 309 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC013470.4-201ENST00000619978 986 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC112204.3-201ENST00000623822 332 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 LRRC77P-213ENST00000637727 880 ntBASIC3.1□□□□□ -1.91
CCDC43Q96MW1 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
CCDC43Q96MW1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC138915.1-201ENST00000565427 1685 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 MIR634-201ENST00000385208 97 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AL512633.1-201ENST00000399931 655 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AL138827.1-201ENST00000402666 306 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 FO393413.1-201ENST00000402892 195 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AL122016.1-201ENST00000403365 367 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AL513331.1-201ENST00000411908 397 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 ZNF863P-201ENST00000426746 417 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 RPL31P41-201ENST00000477967 372 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 RPL9P33-201ENST00000484311 566 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC093809.1-201ENST00000509155 340 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 CDC42P4-201ENST00000510507 563 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 SNORA9.3-201ENST00000516383 129 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC138761.3-201ENST00000579993 334 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 VN1R82P-201ENST00000601481 356 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 AC008277.2-201ENST00000605196 797 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 RNU6-88P-201ENST00000606801 100 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 147.2 ms