Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 Z98742.2-201ENST00000431564 187 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC42Q96M95 MTATP6P7-201ENST00000453315 681 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 MTND2P6-201ENST00000455337 1030 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 SNORA48.10-201ENST00000516965 160 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC42Q96M95 AC022634.1-201ENST00000520765 532 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC42Q96M95 AP002770.2-201ENST00000543613 532 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC42Q96M95 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC42Q96M95 SULT1C2P1-202ENST00000562418 459 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 AL031176.1-201ENST00000604554 466 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC42Q96M95 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2□□□□□ -2.09
CCDC42Q96M95 RNU6-1328P-201ENST00000410938 106 ntBASIC2□□□□□ -2.09
CCDC42Q96M95 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2□□□□□ -2.09
CCDC42Q96M95 AP005902.1-201ENST00000521358 186 ntBASIC2□□□□□ -2.09
CCDC42Q96M95 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
CCDC42Q96M95 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2□□□□□ -2.09
CCDC42Q96M95 AC233266.2-201ENST00000567067 528 ntBASIC2□□□□□ -2.09
CCDC42Q96M95 AC023824.3-201ENST00000569003 562 ntBASIC2□□□□□ -2.09
CCDC42Q96M95 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2□□□□□ -2.09
CCDC42Q96M95 AL022067.1-201ENST00000602426 454 ntBASIC2□□□□□ -2.09
CCDC42Q96M95 AL096840.1-201ENST00000603287 93 ntBASIC2□□□□□ -2.09
CCDC42Q96M95 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2□□□□□ -2.09
CCDC42Q96M95 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CCDC42Q96M95 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2□□□□□ -2.09
CCDC42Q96M95 Y_RNA.510-201ENST00000384511 114 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 AC016769.3-201ENST00000396562 315 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 RNA5SP425-201ENST00000410336 112 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 Z98742.3-201ENST00000418637 326 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC42Q96M95 Z80107.1-201ENST00000436830 412 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 DDX3P2-201ENST00000446138 111 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 EEF1B2P7-201ENST00000451177 676 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 AC023141.11-201ENST00000508864 202 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC42Q96M95 AC022483.1-201ENST00000514020 567 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 RNU5F-8P-201ENST00000515941 111 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC42Q96M95 AC087465.1-201ENST00000560574 245 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC42Q96M95 AC021749.1-201ENST00000604322 607 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 KATNBL1P1-201ENST00000605192 748 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 SDR42E1P2-201ENST00000614861 481 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 DLEU1_1.1-201ENST00000618107 190 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 SDR42E1P4-201ENST00000620894 481 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 IGHVIII-44-202ENST00000636235 289 ntBASIC1.99□□□□□ -2.09
CCDC42Q96M95 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.99□□□□□ -2.09
CCDC42Q96M95 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC42Q96M95 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC007785.2-201ENST00000598627 1916 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 RNU4-82P-201ENST00000362443 140 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 DPH3P2-201ENST00000422618 250 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 AL353705.4-201ENST00000449661 238 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC092757.1-201ENST00000467293 467 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC106872.3-201ENST00000495104 446 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC084024.2-201ENST00000503480 791 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC114786.4-201ENST00000508771 728 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC114797.1-201ENST00000514003 728 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC103833.1-201ENST00000517442 172 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 AL391261.3-201ENST00000557194 520 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 MIR4419B-201ENST00000577260 68 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC024614.2-201ENST00000577584 372 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 MIR4672-201ENST00000583126 81 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 AL671309.1-201ENST00000603750 544 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 MIR1264-201ENST00000616374 69 ntBASIC1.98□□□□□ -2.09
CCDC42Q96M95 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC42Q96M95 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
CCDC42Q96M95 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC42Q96M95 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
CCDC42Q96M95 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC42Q96M95 RNU5A-1-201ENST00000362698 116 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 RNU6-878P-201ENST00000384578 110 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 RNU6-796P-201ENST00000391086 107 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 AL139098.1-201ENST00000407291 389 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 ZDHHC20P2-201ENST00000424108 429 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC42Q96M95 AL590623.1-201ENST00000427864 105 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 MTND4LP14-201ENST00000429447 288 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC42Q96M95 OSTCP8-201ENST00000445117 448 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC42Q96M95 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC42Q96M95 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC42Q96M95 AC091917.2-201ENST00000505002 744 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 145.2 ms