Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC234772.3-201ENST00000602277 528 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AL627309.6-201ENST00000606857 840 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC034102.8-201ENST00000615146 484 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 MIR3651-201ENST00000630427 90 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC006927.4-201ENST00000639187 543 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 AL390862.1-201ENST00000635467 1469 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 CCT4P2-201ENST00000233836 1548 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
VPS39Q96JC1 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 FAM133CP-201ENST00000332869 704 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 RNA5SP374-201ENST00000362939 125 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 RNU6-461P-201ENST00000364195 107 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 ANAPC10P1-201ENST00000395991 556 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AL109755.1-201ENST00000401791 649 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AL122016.1-201ENST00000403365 367 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 ZNF863P-201ENST00000426746 417 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 Z73417.1-201ENST00000447373 778 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 SNORD11.1-201ENST00000459482 85 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 MEMO1P3-201ENST00000459811 302 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC114786.4-201ENST00000508771 728 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 CDC42P4-201ENST00000510507 563 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC112673.1-201ENST00000513168 575 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 MTCYBP43-201ENST00000513621 740 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC114797.1-201ENST00000514003 728 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS39Q96JC1 AP000857.1-201ENST00000532151 543 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 HPRT1P3-201ENST00000539521 576 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC009712.1-201ENST00000564938 316 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 MTATP6P24-201ENST00000576835 677 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 BNIP3P22-201ENST00000593399 556 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC006539.2-201ENST00000601729 572 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC013244.3-201ENST00000605614 388 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC024560.3-201ENST00000608482 349 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC107871.2-201ENST00000612894 502 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC009268.2-201ENST00000621925 457 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC079228.1-201ENST00000624774 1049 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 ASNSP3-201ENST00000451989 1306 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 AC092447.7-201ENST00000422212 1621 ntBASIC2.86□□□□□ -1.95
VPS39Q96JC1 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS39Q96JC1 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
VPS39Q96JC1 AL161431.1-201ENST00000618966 4205 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 DDX10P1-201ENST00000448545 1933 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 AP000568.1-201ENST00000282964 442 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS39Q96JC1 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
VPS39Q96JC1 MIR208A-201ENST00000362287 71 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 SNORA4.1-201ENST00000364263 144 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 SNORA23-201ENST00000365128 182 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 RNU6-1207P-201ENST00000384343 107 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 RPL22P18-201ENST00000417197 377 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 AC006946.1-201ENST00000429106 328 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AC007919.1-201ENST00000429380 217 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 RPS20P5-201ENST00000434808 360 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 ATG12P2-201ENST00000456830 416 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 KC877373.1-201ENST00000479066 408 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AC103975.1-201ENST00000482506 483 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AC083906.5-201ENST00000503722 328 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 SCGB1D5P-201ENST00000515134 247 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 SNORA9.3-201ENST00000516383 129 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 RNU5A-4P-201ENST00000516588 111 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AC022634.1-201ENST00000520765 532 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 HMGN1P28-201ENST00000521340 364 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 COX6CP8-201ENST00000522620 226 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 AC005951.2-201ENST00000576282 495 ntBASIC2.85□□□□□ -1.95
VPS39Q96JC1 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS39Q96JC1 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms