Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GNAI2P1-201ENST00000541815 315 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.54□□□□□ -1.68
RNF4P78317 FAM25E-202ENST00000608562 189 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC005344.1-201ENST00000613391 459 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.54□□□□□ -1.68
RNF4P78317 CR381572.2-201ENST00000624852 397 ntBASIC4.54□□□□□ -1.68
RNF4P78317 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.54□□□□□ -1.68
RNF4P78317 Z99571.1-201ENST00000636677 394 ntBASIC4.54□□□□□ -1.68
RNF4P78317 MIR6715B-201ENST00000637172 77 ntBASIC4.54□□□□□ -1.68
RNF4P78317 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
RNF4P78317 AC008079.2-201ENST00000623543 20396 ntBASIC4.54□□□□□ -1.68
RNF4P78317 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
RNF4P78317 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
RNF4P78317 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
RNF4P78317 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
RNF4P78317 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.54□□□□□ -1.68
RNF4P78317 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
RNF4P78317 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.53□□□□□ -1.68
RNF4P78317 AL445487.1-201ENST00000415694 1580 ntBASIC4.53□□□□□ -1.68
RNF4P78317 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
RNF4P78317 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 AL445529.1-201ENST00000398713 389 ntBASIC4.53□□□□□ -1.68
RNF4P78317 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 MIR1271-201ENST00000408537 86 ntBASIC4.53□□□□□ -1.68
RNF4P78317 SYF2P2-201ENST00000417620 583 ntBASIC4.53□□□□□ -1.68
RNF4P78317 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 AC006466.1-201ENST00000438721 289 ntBASIC4.53□□□□□ -1.68
RNF4P78317 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.53□□□□□ -1.68
RNF4P78317 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 RN7SL517P-201ENST00000462240 305 ntBASIC4.53□□□□□ -1.68
RNF4P78317 VN1R104P-201ENST00000505115 1009 ntBASIC4.53□□□□□ -1.68
RNF4P78317 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 RNU4-77P-201ENST00000516692 156 ntBASIC4.53□□□□□ -1.68
RNF4P78317 Y_RNA.719-201ENST00000517156 106 ntBASIC4.53□□□□□ -1.68
RNF4P78317 RNU4-60P-201ENST00000517239 135 ntBASIC4.53□□□□□ -1.68
RNF4P78317 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC4.53□□□□□ -1.68
RNF4P78317 MIR4480-201ENST00000582492 71 ntBASIC4.53□□□□□ -1.68
RNF4P78317 AC005899.2-201ENST00000584353 90 ntBASIC4.53□□□□□ -1.68
RNF4P78317 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.53□□□□□ -1.68
RNF4P78317 SNORD91B-202ENST00000608459 222 ntBASIC4.53□□□□□ -1.68
RNF4P78317 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.53□□□□□ -1.68
RNF4P78317 SNORD39.4-201ENST00000620099 78 ntBASIC4.53□□□□□ -1.68
RNF4P78317 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.53□□□□□ -1.68
RNF4P78317 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
RNF4P78317 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
RNF4P78317 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
RNF4P78317 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.69
RNF4P78317 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.52□□□□□ -1.69
RNF4P78317 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.52□□□□□ -1.69
RNF4P78317 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
RNF4P78317 AC026951.1-201ENST00000559530 2459 ntBASIC4.52□□□□□ -1.69
RNF4P78317 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.52□□□□□ -1.69
RNF4P78317 UBE2L2-201ENST00000254302 429 ntBASIC4.52□□□□□ -1.69
RNF4P78317 SNORA63.7-201ENST00000365579 123 ntBASIC4.52□□□□□ -1.69
RNF4P78317 Y_RNA.512-201ENST00000384518 102 ntBASIC4.52□□□□□ -1.69
RNF4P78317 RNU6-1179P-201ENST00000384667 107 ntBASIC4.52□□□□□ -1.69
RNF4P78317 RNU6-101P-201ENST00000410323 104 ntBASIC4.52□□□□□ -1.69
RNF4P78317 AL353997.1-201ENST00000432936 108 ntBASIC4.52□□□□□ -1.69
RNF4P78317 HSPD1P21-201ENST00000436541 245 ntBASIC4.52□□□□□ -1.69
RNF4P78317 RPL35AP21-201ENST00000437667 333 ntBASIC4.52□□□□□ -1.69
RNF4P78317 RANP8-201ENST00000444720 713 ntBASIC4.52□□□□□ -1.69
RNF4P78317 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.52□□□□□ -1.69
RNF4P78317 AL353752.1-201ENST00000454946 260 ntBASIC4.52□□□□□ -1.69
RNF4P78317 AURKAPS2-201ENST00000454983 333 ntBASIC4.52□□□□□ -1.69
RNF4P78317 PCMTD1P1-201ENST00000455560 355 ntBASIC4.52□□□□□ -1.69
RNF4P78317 AC010655.3-201ENST00000478818 450 ntBASIC4.52□□□□□ -1.69
RNF4P78317 AC092451.1-201ENST00000480211 153 ntBASIC4.52□□□□□ -1.69
RNF4P78317 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.52□□□□□ -1.69
RNF4P78317 AC068781.1-201ENST00000488231 618 ntBASIC4.52□□□□□ -1.69
RNF4P78317 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.52□□□□□ -1.69
RNF4P78317 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.52□□□□□ -1.69
RNF4P78317 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.52□□□□□ -1.69
RNF4P78317 AC087369.1-201ENST00000520775 996 ntBASIC4.52□□□□□ -1.69
RNF4P78317 RPL23AP53-201ENST00000521854 457 ntBASIC4.52□□□□□ -1.69
RNF4P78317 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.52□□□□□ -1.69
RNF4P78317 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.52□□□□□ -1.69
RNF4P78317 LRRC37A5P-203ENST00000580181 585 ntBASIC4.52□□□□□ -1.69
RNF4P78317 RN7SL52P-201ENST00000584271 284 ntBASIC4.52□□□□□ -1.69
RNF4P78317 OR1M4P-201ENST00000589199 287 ntBASIC4.52□□□□□ -1.69
RNF4P78317 PRR13P7-201ENST00000605538 430 ntBASIC4.52□□□□□ -1.69
RNF4P78317 SNORD58B-201ENST00000607313 66 ntBASIC4.52□□□□□ -1.69
RNF4P78317 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.52□□□□□ -1.69
RNF4P78317 AC091953.3-201ENST00000623220 236 ntBASIC4.52□□□□□ -1.69
RNF4P78317 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
RNF4P78317 AL391684.1-202ENST00000641293 1636 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms