Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR7154-201ENST00000620673 73 ntBASIC4.92□□□□□ -1.62
LIG3P49916 MIR6715B-201ENST00000637172 77 ntBASIC4.92□□□□□ -1.62
LIG3P49916 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG3P49916 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
LIG3P49916 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LIG3P49916 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG3P49916 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG3P49916 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG3P49916 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.91□□□□□ -1.62
LIG3P49916 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LIG3P49916 AL365440.1-201ENST00000436135 2167 ntBASIC4.91□□□□□ -1.62
LIG3P49916 AC009812.4-201ENST00000569134 1805 ntBASIC4.91□□□□□ -1.62
LIG3P49916 DDX18P3-201ENST00000404856 2007 ntBASIC4.91□□□□□ -1.62
LIG3P49916 RNU6-1309P-201ENST00000363305 108 ntBASIC4.91□□□□□ -1.62
LIG3P49916 RNU6-266P-201ENST00000364225 107 ntBASIC4.91□□□□□ -1.62
LIG3P49916 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG3P49916 SNORA36C-201ENST00000384289 132 ntBASIC4.91□□□□□ -1.62
LIG3P49916 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG3P49916 Y_RNA.594-201ENST00000410373 140 ntBASIC4.91□□□□□ -1.62
LIG3P49916 RNU6-293P-201ENST00000411259 106 ntBASIC4.91□□□□□ -1.62
LIG3P49916 TBCAP2-201ENST00000416175 326 ntBASIC4.91□□□□□ -1.62
LIG3P49916 MCFD2P1-201ENST00000417812 300 ntBASIC4.91□□□□□ -1.62
LIG3P49916 AC018865.2-201ENST00000423631 129 ntBASIC4.91□□□□□ -1.62
LIG3P49916 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.91□□□□□ -1.62
LIG3P49916 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.91□□□□□ -1.62
LIG3P49916 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC4.91□□□□□ -1.62
LIG3P49916 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.91□□□□□ -1.62
LIG3P49916 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.91□□□□□ -1.62
LIG3P49916 AL135752.1-201ENST00000479477 471 ntBASIC4.91□□□□□ -1.62
LIG3P49916 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.91□□□□□ -1.62
LIG3P49916 AC026782.1-201ENST00000512952 449 ntBASIC4.91□□□□□ -1.62
LIG3P49916 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.91□□□□□ -1.62
LIG3P49916 IGLV3-26-201ENST00000520756 302 ntBASIC4.91□□□□□ -1.62
LIG3P49916 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.91□□□□□ -1.62
LIG3P49916 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.91□□□□□ -1.62
LIG3P49916 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.91□□□□□ -1.62
LIG3P49916 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.91□□□□□ -1.62
LIG3P49916 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.91□□□□□ -1.62
LIG3P49916 AL354984.3-201ENST00000604803 325 ntBASIC4.91□□□□□ -1.62
LIG3P49916 HMGN2P28-201ENST00000606102 262 ntBASIC4.91□□□□□ -1.62
LIG3P49916 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.91□□□□□ -1.62
LIG3P49916 AL132822.1-201ENST00000617063 513 ntBASIC4.91□□□□□ -1.62
LIG3P49916 AC092608.2-201ENST00000624427 218 ntBASIC4.91□□□□□ -1.62
LIG3P49916 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIG3P49916 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.91□□□□□ -1.62
LIG3P49916 MTND5P1-201ENST00000445440 1375 ntBASIC4.91□□□□□ -1.62
LIG3P49916 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
LIG3P49916 AC090337.1-201ENST00000579651 2074 ntBASIC4.9□□□□□ -1.62
LIG3P49916 AC009643.2-201ENST00000603543 1448 ntBASIC4.9□□□□□ -1.62
LIG3P49916 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
LIG3P49916 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.9□□□□□ -1.62
LIG3P49916 SNORD62.1-201ENST00000362541 86 ntBASIC4.9□□□□□ -1.63
LIG3P49916 RNA5SP191-201ENST00000362585 102 ntBASIC4.9□□□□□ -1.63
LIG3P49916 Y_RNA.158-201ENST00000363651 101 ntBASIC4.9□□□□□ -1.63
LIG3P49916 RNA5SP87-201ENST00000384155 118 ntBASIC4.9□□□□□ -1.63
LIG3P49916 SNORA75.6-201ENST00000391318 127 ntBASIC4.9□□□□□ -1.63
LIG3P49916 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LIG3P49916 AL357515.1-201ENST00000402967 542 ntBASIC4.9□□□□□ -1.63
LIG3P49916 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.9□□□□□ -1.63
LIG3P49916 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.9□□□□□ -1.63
LIG3P49916 MTCYBP10-201ENST00000424905 650 ntBASIC4.9□□□□□ -1.63
LIG3P49916 AC236972.1-201ENST00000433225 199 ntBASIC4.9□□□□□ -1.63
LIG3P49916 HIGD1AP11-201ENST00000438361 280 ntBASIC4.9□□□□□ -1.63
LIG3P49916 AP000926.1-201ENST00000479573 241 ntBASIC4.9□□□□□ -1.63
LIG3P49916 OR7H2P-201ENST00000513483 306 ntBASIC4.9□□□□□ -1.63
LIG3P49916 Y_RNA.670-201ENST00000516255 105 ntBASIC4.9□□□□□ -1.63
LIG3P49916 RNU6-914P-201ENST00000516749 109 ntBASIC4.9□□□□□ -1.63
LIG3P49916 AC069113.1-201ENST00000517763 267 ntBASIC4.9□□□□□ -1.63
LIG3P49916 AL352979.3-201ENST00000553515 247 ntBASIC4.9□□□□□ -1.63
LIG3P49916 RN7SL652P-201ENST00000577769 300 ntBASIC4.9□□□□□ -1.63
LIG3P49916 MIR3667-201ENST00000581025 74 ntBASIC4.9□□□□□ -1.63
LIG3P49916 MIR4737-201ENST00000583979 81 ntBASIC4.9□□□□□ -1.63
LIG3P49916 AL139395.1-201ENST00000603662 160 ntBASIC4.9□□□□□ -1.63
LIG3P49916 AC002044.1-201ENST00000606707 158 ntBASIC4.9□□□□□ -1.63
LIG3P49916 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LIG3P49916 AC010205.1-201ENST00000616668 449 ntBASIC4.9□□□□□ -1.63
LIG3P49916 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.9□□□□□ -1.63
LIG3P49916 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
LIG3P49916 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LIG3P49916 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.9□□□□□ -1.63
LIG3P49916 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIG3P49916 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIG3P49916 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIG3P49916 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.89□□□□□ -1.63
LIG3P49916 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIG3P49916 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIG3P49916 RNU6-173P-201ENST00000364215 104 ntBASIC4.89□□□□□ -1.63
LIG3P49916 Y_RNA.252-201ENST00000364556 101 ntBASIC4.89□□□□□ -1.63
LIG3P49916 RNU6-1032P-201ENST00000384100 107 ntBASIC4.89□□□□□ -1.63
LIG3P49916 RNU6-196P-201ENST00000384315 107 ntBASIC4.89□□□□□ -1.63
LIG3P49916 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
LIG3P49916 AC097374.1-203ENST00000400783 485 ntBASIC4.89□□□□□ -1.63
LIG3P49916 RPL21P90-201ENST00000415692 466 ntBASIC4.89□□□□□ -1.63
LIG3P49916 AC004552.1-201ENST00000419089 348 ntBASIC4.89□□□□□ -1.63
LIG3P49916 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.89□□□□□ -1.63
LIG3P49916 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.89□□□□□ -1.63
LIG3P49916 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.89□□□□□ -1.63
LIG3P49916 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.89□□□□□ -1.63
LIG3P49916 AC000111.2-201ENST00000448200 210 ntBASIC4.89□□□□□ -1.63
LIG3P49916 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms