Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP001429.1-201ENST00000602568 530 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AL022099.1-201ENST00000604551 712 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AL035413.2-201ENST00000604801 525 ntBASIC3.78□□□□□ -1.8
CTCFP49711 ATP1B3P1-201ENST00000605365 821 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AL158211.4-201ENST00000606988 584 ntBASIC3.78□□□□□ -1.8
CTCFP49711 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.78□□□□□ -1.8
CTCFP49711 AL110115.1-201ENST00000614396 364 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AC012150.2-201ENST00000621300 544 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AC011460.1-201ENST00000636268 1834 ntBASIC3.78□□□□□ -1.8
CTCFP49711 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
CTCFP49711 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CTCFP49711 AC092125.1-201ENST00000562568 1995 ntBASIC3.78□□□□□ -1.8
CTCFP49711 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CTCFP49711 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.78□□□□□ -1.81
CTCFP49711 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.77□□□□□ -1.81
CTCFP49711 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CTCFP49711 RNY4P24-201ENST00000362735 96 ntBASIC3.77□□□□□ -1.81
CTCFP49711 RNU4-40P-201ENST00000364351 143 ntBASIC3.77□□□□□ -1.81
CTCFP49711 RNU6-1078P-201ENST00000364522 103 ntBASIC3.77□□□□□ -1.81
CTCFP49711 RNU6-809P-201ENST00000384461 107 ntBASIC3.77□□□□□ -1.81
CTCFP49711 RNU6-482P-201ENST00000391068 107 ntBASIC3.77□□□□□ -1.81
CTCFP49711 RNU2-43P-201ENST00000410306 190 ntBASIC3.77□□□□□ -1.81
CTCFP49711 CCDC58P2-201ENST00000417131 366 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AL139132.1-201ENST00000431587 344 ntBASIC3.77□□□□□ -1.81
CTCFP49711 UBE2V1P13-201ENST00000436983 439 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AL135938.1-201ENST00000443141 297 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.77□□□□□ -1.81
CTCFP49711 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.77□□□□□ -1.81
CTCFP49711 COX6CP12-201ENST00000446748 202 ntBASIC3.77□□□□□ -1.81
CTCFP49711 MTND1P9-201ENST00000453775 944 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AL122001.1-201ENST00000457027 370 ntBASIC3.77□□□□□ -1.81
CTCFP49711 RPS3AP50-201ENST00000487064 803 ntBASIC3.77□□□□□ -1.81
CTCFP49711 MTND4LP22-201ENST00000508209 276 ntBASIC3.77□□□□□ -1.81
CTCFP49711 PCBP2P3-201ENST00000509726 843 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AC008413.1-201ENST00000511864 177 ntBASIC3.77□□□□□ -1.81
CTCFP49711 RNU6-991P-201ENST00000516168 107 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AC093331.1-201ENST00000521474 169 ntBASIC3.77□□□□□ -1.81
CTCFP49711 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CTCFP49711 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.77□□□□□ -1.81
CTCFP49711 SETP2-201ENST00000553886 926 ntBASIC3.77□□□□□ -1.81
CTCFP49711 ACTR3BP3-201ENST00000565577 979 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.77□□□□□ -1.81
CTCFP49711 FAM60BP-201ENST00000578364 658 ntBASIC3.77□□□□□ -1.81
CTCFP49711 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.77□□□□□ -1.81
CTCFP49711 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.77□□□□□ -1.81
CTCFP49711 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.77□□□□□ -1.81
CTCFP49711 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.77□□□□□ -1.81
CTCFP49711 AC073114.1-201ENST00000612027 490 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AC093783.1-201ENST00000612976 329 ntBASIC3.77□□□□□ -1.81
CTCFP49711 AC027807.2-201ENST00000616099 408 ntBASIC3.77□□□□□ -1.81
CTCFP49711 Z69908.1-201ENST00000622603 247 ntBASIC3.77□□□□□ -1.81
CTCFP49711 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CTCFP49711 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CTCFP49711 MTND4P4-201ENST00000439033 1366 ntBASIC3.76□□□□□ -1.81
CTCFP49711 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CTCFP49711 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CTCFP49711 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
CTCFP49711 SNORD116-9-201ENST00000384000 95 ntBASIC3.76□□□□□ -1.81
CTCFP49711 SNORD116-3-201ENST00000384287 95 ntBASIC3.76□□□□□ -1.81
CTCFP49711 SNORD116-7-201ENST00000384404 95 ntBASIC3.76□□□□□ -1.81
CTCFP49711 SNORD116-5-201ENST00000384462 95 ntBASIC3.76□□□□□ -1.81
CTCFP49711 RPS3AP24-201ENST00000407896 734 ntBASIC3.76□□□□□ -1.81
CTCFP49711 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CTCFP49711 RPL17P12-201ENST00000413391 526 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AC063976.3-201ENST00000426849 329 ntBASIC3.76□□□□□ -1.81
CTCFP49711 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.76□□□□□ -1.81
CTCFP49711 AC098826.1-201ENST00000433943 471 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.76□□□□□ -1.81
CTCFP49711 RAC1P7-201ENST00000445367 377 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.76□□□□□ -1.81
CTCFP49711 AC006539.3-201ENST00000454258 129 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.76□□□□□ -1.81
CTCFP49711 AC116337.2-201ENST00000477662 156 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AC012181.1-201ENST00000479895 423 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AC105313.1-201ENST00000509121 353 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.76□□□□□ -1.81
CTCFP49711 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.76□□□□□ -1.81
CTCFP49711 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.76□□□□□ -1.81
CTCFP49711 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.76□□□□□ -1.81
CTCFP49711 AL163153.1-201ENST00000554223 283 ntBASIC3.76□□□□□ -1.81
CTCFP49711 OR4T1P-201ENST00000554933 911 ntBASIC3.76□□□□□ -1.81
CTCFP49711 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.76□□□□□ -1.81
CTCFP49711 MIR548AB-201ENST00000584917 84 ntBASIC3.76□□□□□ -1.81
CTCFP49711 TPMTP1-201ENST00000592307 737 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.76□□□□□ -1.81
CTCFP49711 U73023.1-201ENST00000603134 700 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AP001981.2-201ENST00000603241 418 ntBASIC3.76□□□□□ -1.81
CTCFP49711 MIR6130-201ENST00000619419 109 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AC048344.4-201ENST00000619744 527 ntBASIC3.76□□□□□ -1.81
CTCFP49711 AL732372.2-225ENST00000642124 456 ntBASIC3.76□□□□□ -1.81
CTCFP49711 TAB3P1-202ENST00000452645 1634 ntBASIC3.76□□□□□ -1.81
CTCFP49711 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.76□□□□□ -1.81
CTCFP49711 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.75□□□□□ -1.81
CTCFP49711 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.75□□□□□ -1.81
CTCFP49711 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CTCFP49711 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
CTCFP49711 Y_RNA.46-201ENST00000362695 102 ntBASIC3.75□□□□□ -1.81
CTCFP49711 U3.4-201ENST00000363352 213 ntBASIC3.75□□□□□ -1.81
CTCFP49711 RNU5F-7P-201ENST00000363696 115 ntBASIC3.75□□□□□ -1.81
CTCFP49711 RPS20P2-201ENST00000402520 389 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms