Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AL590365.1-201ENST00000450788 243 ntBASIC3.21□□□□□ -1.9
LHX1P48742 RPS27AP8-201ENST00000452665 445 ntBASIC3.21□□□□□ -1.9
LHX1P48742 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.21□□□□□ -1.9
LHX1P48742 RNU7-59P-201ENST00000459101 61 ntBASIC3.21□□□□□ -1.9
LHX1P48742 AL049714.1-201ENST00000466686 347 ntBASIC3.21□□□□□ -1.9
LHX1P48742 AC117440.1-201ENST00000474107 571 ntBASIC3.21□□□□□ -1.9
LHX1P48742 RN7SL20P-201ENST00000488827 297 ntBASIC3.21□□□□□ -1.9
LHX1P48742 AL049874.1-201ENST00000489560 388 ntBASIC3.21□□□□□ -1.9
LHX1P48742 RPS15AP36-201ENST00000492022 382 ntBASIC3.21□□□□□ -1.9
LHX1P48742 AC114967.1-201ENST00000504890 259 ntBASIC3.21□□□□□ -1.9
LHX1P48742 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.21□□□□□ -1.9
LHX1P48742 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.21□□□□□ -1.9
LHX1P48742 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.21□□□□□ -1.9
LHX1P48742 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.21□□□□□ -1.9
LHX1P48742 AL133153.1-201ENST00000557756 303 ntBASIC3.21□□□□□ -1.9
LHX1P48742 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.21□□□□□ -1.9
LHX1P48742 MIR5697-201ENST00000578045 78 ntBASIC3.21□□□□□ -1.9
LHX1P48742 AL390240.1-201ENST00000612950 384 ntBASIC3.21□□□□□ -1.9
LHX1P48742 TUG1_2.1-201ENST00000614234 87 ntBASIC3.21□□□□□ -1.9
LHX1P48742 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.21□□□□□ -1.9
LHX1P48742 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.21□□□□□ -1.9
LHX1P48742 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.21□□□□□ -1.9
LHX1P48742 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.21□□□□□ -1.9
LHX1P48742 SDAD1P2-201ENST00000441308 2028 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AL035425.3-201ENST00000564206 4996 ntBASIC3.2□□□□□ -1.9
LHX1P48742 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX1P48742 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
LHX1P48742 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
LHX1P48742 AC090740.1-201ENST00000623193 2262 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AC073325.2-201ENST00000339545 159 ntBASIC3.2□□□□□ -1.9
LHX1P48742 RNA5SP295-201ENST00000362655 121 ntBASIC3.2□□□□□ -1.9
LHX1P48742 SNORA36C-201ENST00000384289 132 ntBASIC3.2□□□□□ -1.9
LHX1P48742 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
LHX1P48742 NDUFB4P4-201ENST00000404822 243 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX1P48742 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX1P48742 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX1P48742 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX1P48742 AC018630.2-202ENST00000422992 927 ntBASIC3.2□□□□□ -1.9
LHX1P48742 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.2□□□□□ -1.9
LHX1P48742 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX1P48742 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX1P48742 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX1P48742 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.2□□□□□ -1.9
LHX1P48742 AC116337.2-201ENST00000477662 156 ntBASIC3.2□□□□□ -1.9
LHX1P48742 RPL31P60-201ENST00000478450 367 ntBASIC3.2□□□□□ -1.9
LHX1P48742 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LHX1P48742 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX1P48742 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.2□□□□□ -1.9
LHX1P48742 Y_RNA.688-201ENST00000516565 95 ntBASIC3.2□□□□□ -1.9
LHX1P48742 RNU6-201P-201ENST00000517100 61 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX1P48742 IGHV3-76-201ENST00000522465 295 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX1P48742 AC107016.2-201ENST00000547968 190 ntBASIC3.2□□□□□ -1.9
LHX1P48742 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX1P48742 OR4H12P-201ENST00000556269 907 ntBASIC3.2□□□□□ -1.9
LHX1P48742 ZNF519P3-201ENST00000557158 1032 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AL356432.3-201ENST00000568952 465 ntBASIC3.2□□□□□ -1.9
LHX1P48742 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AL451007.1-201ENST00000595491 289 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX1P48742 AP001981.2-201ENST00000603241 418 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AL590229.1-201ENST00000603497 542 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AP000254.1-201ENST00000609934 520 ntBASIC3.2□□□□□ -1.9
LHX1P48742 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LHX1P48742 ATP5A1P2-202ENST00000616464 443 ntBASIC3.2□□□□□ -1.9
LHX1P48742 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
LHX1P48742 MTND4P4-201ENST00000439033 1366 ntBASIC3.2□□□□□ -1.9
LHX1P48742 AC008568.2-201ENST00000623862 2313 ntBASIC3.2□□□□□ -1.9
LHX1P48742 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
LHX1P48742 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
LHX1P48742 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.19□□□□□ -1.9
LHX1P48742 AC007256.1-201ENST00000392253 2765 ntBASIC3.19□□□□□ -1.9
LHX1P48742 ZNF807-201ENST00000328088 1707 ntBASIC3.19□□□□□ -1.9
LHX1P48742 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LHX1P48742 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.19□□□□□ -1.9
LHX1P48742 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX1P48742 RNU5A-8P-201ENST00000364102 114 ntBASIC3.19□□□□□ -1.9
LHX1P48742 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX1P48742 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.19□□□□□ -1.9
LHX1P48742 RNU6-851P-201ENST00000384565 107 ntBASIC3.19□□□□□ -1.9
LHX1P48742 SNORA44-201ENST00000384584 132 ntBASIC3.19□□□□□ -1.9
LHX1P48742 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX1P48742 AL353777.1-201ENST00000425552 326 ntBASIC3.19□□□□□ -1.9
LHX1P48742 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.19□□□□□ -1.9
LHX1P48742 TRIM60P18-201ENST00000441518 828 ntBASIC3.19□□□□□ -1.9
LHX1P48742 ELOCP30-201ENST00000447108 299 ntBASIC3.19□□□□□ -1.9
LHX1P48742 SSXP4-201ENST00000451349 245 ntBASIC3.19□□□□□ -1.9
LHX1P48742 MTND2P24-201ENST00000453434 806 ntBASIC3.19□□□□□ -1.9
LHX1P48742 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX1P48742 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX1P48742 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX1P48742 RPS3AP14-201ENST00000483907 780 ntBASIC3.19□□□□□ -1.9
LHX1P48742 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX1P48742 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX1P48742 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX1P48742 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX1P48742 AC123904.2-201ENST00000548059 300 ntBASIC3.19□□□□□ -1.9
LHX1P48742 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms