Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC105914.1-201ENST00000511798 226 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 IGJP1-201ENST00000522682 475 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.16□□□□□ -2.06
COL18A1P39060 AC087481.2-201ENST00000565492 330 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.16□□□□□ -2.06
COL18A1P39060 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.16□□□□□ -2.06
COL18A1P39060 ZNF92P2-201ENST00000600543 1059 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 AC025588.3-201ENST00000604182 274 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 RPL23AP88-201ENST00000605759 454 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 AC097372.4-201ENST00000625025 466 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL18A1P39060 SGO1P1-201ENST00000603525 1447 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL18A1P39060 AL136520.1-201ENST00000600311 1322 ntBASIC2.16□□□□□ -2.06
COL18A1P39060 SNORD48-201ENST00000364953 64 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
COL18A1P39060 RNU6-821P-201ENST00000390995 107 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.15□□□□□ -2.06
COL18A1P39060 HSPE1P1-201ENST00000421494 318 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 RPS6P14-201ENST00000425165 719 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 AC104073.1-201ENST00000451988 151 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.15□□□□□ -2.06
COL18A1P39060 PPP1R2P5-201ENST00000457256 603 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 TOMM22P6-201ENST00000465035 409 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 RPS23P3-201ENST00000470993 430 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 RNU6-1102P-201ENST00000516149 96 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.15□□□□□ -2.06
COL18A1P39060 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.15□□□□□ -2.06
COL18A1P39060 AC007375.1-201ENST00000554513 578 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC2.15□□□□□ -2.06
COL18A1P39060 MIR4421-201ENST00000578133 69 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 RN7SL622P-201ENST00000585292 275 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 AL020997.3-201ENST00000602843 359 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 AC019159.1-201ENST00000605094 187 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.15□□□□□ -2.06
COL18A1P39060 HPVC1-201ENST00000629899 1198 ntBASIC2.15□□□□□ -2.06
COL18A1P39060 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.15□□□□□ -2.06
COL18A1P39060 AC130650.2-201ENST00000618736 2403 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 RNU6-60P-201ENST00000364792 103 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 AC099677.1-201ENST00000420575 175 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 AC246680.2-201ENST00000422106 389 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 MTCYBP34-201ENST00000439552 670 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 BNIP3P2-201ENST00000441221 577 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 GTF2IP12-201ENST00000456547 356 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 RNU1-123P-201ENST00000458950 160 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC2.15□□□□□ -2.07
COL18A1P39060 AC023824.3-201ENST00000569003 562 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.15□□□□□ -2.07
COL18A1P39060 AC098848.2-201ENST00000588023 330 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.15□□□□□ -2.07
COL18A1P39060 AC018755.4-201ENST00000619715 454 ntBASIC2.15□□□□□ -2.07
COL18A1P39060 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
COL18A1P39060 MIR16-2-201ENST00000362117 81 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 Y_RNA.112-201ENST00000363250 102 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 RNA5SP325-201ENST00000363756 130 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 RNU4-27P-201ENST00000410889 139 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 AC109780.2-201ENST00000413467 845 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 BX510359.4-201ENST00000423750 193 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.14□□□□□ -2.07
COL18A1P39060 AC233728.2-201ENST00000425348 757 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.14□□□□□ -2.07
COL18A1P39060 RSL24D1P8-201ENST00000434442 492 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 RPL21P2-201ENST00000440049 481 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 RABEPKP1-201ENST00000440529 1026 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.14□□□□□ -2.07
COL18A1P39060 AC109471.1-201ENST00000511631 612 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 ZNF705CP-201ENST00000530515 889 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 DNAJC8P1-201ENST00000554535 372 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 AL354943.1-201ENST00000572103 781 ntBASIC2.14□□□□□ -2.07
COL18A1P39060 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
COL18A1P39060 Y_RNA.327-201ENST00000365201 102 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 MIR16-1-201ENST00000385271 89 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 SNORD65C-201ENST00000390962 71 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
COL18A1P39060 RNU6-174P-201ENST00000410406 106 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 AL158050.1-201ENST00000416077 457 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.13□□□□□ -2.07
COL18A1P39060 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
COL18A1P39060 RPL7P55-201ENST00000450522 746 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 MTCO3P2-201ENST00000457365 171 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC2.13□□□□□ -2.07
COL18A1P39060 VPS26AP1-201ENST00000483197 979 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 AC079203.1-201ENST00000487972 404 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.13□□□□□ -2.07
COL18A1P39060 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.13□□□□□ -2.07
COL18A1P39060 AL671309.1-201ENST00000603750 544 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC2.13□□□□□ -2.07
COL18A1P39060 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
COL18A1P39060 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.13□□□□□ -2.07
COL18A1P39060 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.13□□□□□ -2.07
COL18A1P39060 SGO1P2-201ENST00000429458 1589 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 RNU6-921P-201ENST00000384361 107 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 AL023807.1-201ENST00000407932 359 ntBASIC2.13□□□□□ -2.07
COL18A1P39060 AL445183.3-201ENST00000414168 502 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms