Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RN7SL604P-201ENST00000492589 296 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RN7SL691P-201ENST00000494487 301 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD3P31249 AC103851.1-201ENST00000506833 274 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD3P31249 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD3P31249 RNA5SP73-201ENST00000516744 108 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RNU6-1153P-201ENST00000516760 105 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD3P31249 AC018630.1-201ENST00000541376 925 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC006064.5-201ENST00000541782 248 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD3P31249 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD3P31249 RPL23AP84-201ENST00000571193 464 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC005951.2-201ENST00000576282 495 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD3P31249 MIR4286-201ENST00000580651 93 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC008521.1-201ENST00000587471 187 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 DPPA3P3-201ENST00000603842 430 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC013553.2-201ENST00000604244 589 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC021646.1-201ENST00000605469 484 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AL132765.2-201ENST00000610812 351 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 DUSP12P1-201ENST00000612874 516 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC009233.1-201ENST00000616477 371 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC006133.1-201ENST00000617106 264 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
HOXD3P31249 AC015967.1-201ENST00000619893 476 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC019278.1-201ENST00000623516 479 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 FRG1KP-201ENST00000623592 341 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD3P31249 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD3P31249 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD3P31249 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD3P31249 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.27□□□□□ -1.89
HOXD3P31249 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD3P31249 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 AL157700.1-201ENST00000561973 1432 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
HOXD3P31249 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD3P31249 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD3P31249 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD3P31249 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD3P31249 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
HOXD3P31249 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD3P31249 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD3P31249 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD3P31249 Y_RNA.58-201ENST00000362807 102 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RNU6-1287P-201ENST00000362914 107 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 Y_RNA.154-201ENST00000363624 102 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RNA5SP189-201ENST00000364920 115 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RNY3P1-201ENST00000365085 102 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RNY3-201ENST00000365484 102 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 Y_RNA.378-201ENST00000365652 113 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 Y_RNA.490-201ENST00000384413 102 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RNU6-831P-201ENST00000384548 107 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RNU6-14P-201ENST00000384630 106 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RNU6-1060P-201ENST00000384664 107 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RNA5SP171-201ENST00000391071 115 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RPL21P65-201ENST00000406094 466 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC007390.1-201ENST00000415722 356 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AL356095.1-201ENST00000417217 199 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.26□□□□□ -1.89
HOXD3P31249 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 RPL7P46-201ENST00000425129 740 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 IFNA20P-201ENST00000436840 528 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 HMGB3P11-201ENST00000440127 604 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 AC020550.1-201ENST00000447385 163 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 SNRPFP3-201ENST00000457792 225 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RPS29P19-201ENST00000479709 171 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RN7SL432P-201ENST00000484057 298 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC083904.1-201ENST00000487828 231 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 RPS27AP13-201ENST00000498403 237 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC078918.1-201ENST00000498515 228 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 CCDC34P1-201ENST00000507441 517 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 Y_RNA.665-201ENST00000516177 98 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 AP006587.4-201ENST00000526053 529 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC022690.1-201ENST00000526681 550 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD3P31249 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD3P31249 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD3P31249 BNIP3P6-201ENST00000549284 499 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD3P31249 PSMA3P-201ENST00000555485 635 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 OR4H12P-201ENST00000556269 907 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD3P31249 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.26□□□□□ -1.89
HOXD3P31249 RN7SL600P-201ENST00000581811 299 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD3P31249 VN1R80P-201ENST00000597126 338 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms