Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RPL30P14-201ENST00000482744 348 ntBASIC2.68□□□□□ -1.98
SDC1P18827 RPS3AP22-201ENST00000488297 769 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AC083906.5-201ENST00000503722 328 ntBASIC2.68□□□□□ -1.98
SDC1P18827 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.68□□□□□ -1.98
SDC1P18827 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.68□□□□□ -1.98
SDC1P18827 SCARNA15.2-201ENST00000516409 127 ntBASIC2.68□□□□□ -1.98
SDC1P18827 RNU6-1256P-201ENST00000516539 103 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AC008015.1-201ENST00000555505 465 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC1P18827 AL133153.1-201ENST00000557756 303 ntBASIC2.68□□□□□ -1.98
SDC1P18827 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.68□□□□□ -1.98
SDC1P18827 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.68□□□□□ -1.98
SDC1P18827 MIR3605-201ENST00000583214 100 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.68□□□□□ -1.98
SDC1P18827 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC1P18827 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC1P18827 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.68□□□□□ -1.98
SDC1P18827 AC112187.2-201ENST00000604345 283 ntBASIC2.68□□□□□ -1.98
SDC1P18827 TUG1_2.1-201ENST00000614234 87 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.68□□□□□ -1.98
SDC1P18827 ATP5A1P2-202ENST00000616464 443 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AP000676.3-201ENST00000623299 569 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AC027309.3-201ENST00000623419 351 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AC091965.5-201ENST00000624785 342 ntBASIC2.68□□□□□ -1.98
SDC1P18827 MIR3651-201ENST00000630427 90 ntBASIC2.68□□□□□ -1.98
SDC1P18827 MIR4275-201ENST00000636486 87 ntBASIC2.68□□□□□ -1.98
SDC1P18827 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
SDC1P18827 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
SDC1P18827 AL161431.1-201ENST00000618966 4205 ntBASIC2.67□□□□□ -1.98
SDC1P18827 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
SDC1P18827 SNORA1.3-201ENST00000384676 136 ntBASIC2.67□□□□□ -1.98
SDC1P18827 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.67□□□□□ -1.98
SDC1P18827 UBE2FP1-201ENST00000416536 447 ntBASIC2.67□□□□□ -1.98
SDC1P18827 MRPL50P2-201ENST00000416821 482 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AL139281.1-201ENST00000422120 335 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AL389915.1-201ENST00000422463 466 ntBASIC2.67□□□□□ -1.98
SDC1P18827 MTND5P25-201ENST00000430499 799 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AC022018.1-201ENST00000430685 241 ntBASIC2.67□□□□□ -1.98
SDC1P18827 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.67□□□□□ -1.98
SDC1P18827 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC1P18827 RPL35AP22-201ENST00000436855 335 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AL671855.1-201ENST00000446875 1203 ntBASIC2.67□□□□□ -1.98
SDC1P18827 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC1P18827 RPS29P26-201ENST00000477483 171 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AC103975.1-201ENST00000482506 483 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AC055855.1-201ENST00000489563 579 ntBASIC2.67□□□□□ -1.98
SDC1P18827 RPS15AP36-201ENST00000492022 382 ntBASIC2.67□□□□□ -1.98
SDC1P18827 RPL30P5-201ENST00000494923 336 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC1P18827 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.67□□□□□ -1.98
SDC1P18827 AC091826.1-201ENST00000514065 313 ntBASIC2.67□□□□□ -1.98
SDC1P18827 SCARNA13-201ENST00000516672 275 ntBASIC2.67□□□□□ -1.98
SDC1P18827 RNU6-840P-201ENST00000517275 65 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.67□□□□□ -1.98
SDC1P18827 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.67□□□□□ -1.98
SDC1P18827 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.67□□□□□ -1.98
SDC1P18827 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC1P18827 AC007954.1-201ENST00000554198 494 ntBASIC2.67□□□□□ -1.98
SDC1P18827 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC1P18827 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC1P18827 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC1P18827 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.67□□□□□ -1.98
SDC1P18827 AC090616.2-202ENST00000584248 222 ntBASIC2.67□□□□□ -1.98
SDC1P18827 TPMTP1-201ENST00000592307 737 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AP000403.1-201ENST00000603349 851 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AL355472.4-201ENST00000610233 626 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AC093838.1-201ENST00000613014 469 ntBASIC2.67□□□□□ -1.98
SDC1P18827 AC006111.3-201ENST00000622137 383 ntBASIC2.67□□□□□ -1.98
SDC1P18827 MIR6733-201ENST00000635723 61 ntBASIC2.67□□□□□ -1.98
SDC1P18827 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
SDC1P18827 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
SDC1P18827 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
SDC1P18827 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
SDC1P18827 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
SDC1P18827 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
SDC1P18827 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
SDC1P18827 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
SDC1P18827 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
SDC1P18827 MIR26A1-201ENST00000362205 77 ntBASIC2.66□□□□□ -1.98
SDC1P18827 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
SDC1P18827 MIR23B-201ENST00000384832 97 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AL138885.1-201ENST00000405921 675 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AC078974.1-201ENST00000411597 223 ntBASIC2.66□□□□□ -1.98
SDC1P18827 VPS26BP1-201ENST00000417155 755 ntBASIC2.66□□□□□ -1.98
SDC1P18827 RPS27AP14-201ENST00000422868 454 ntBASIC2.66□□□□□ -1.98
SDC1P18827 RPL7L1P10-201ENST00000427790 463 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.66□□□□□ -1.98
SDC1P18827 RPL7P34-201ENST00000433316 712 ntBASIC2.66□□□□□ -1.98
SDC1P18827 MTCYBP39-201ENST00000437562 491 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.66□□□□□ -1.98
SDC1P18827 ART2BP-201ENST00000453501 499 ntBASIC2.66□□□□□ -1.98
SDC1P18827 MTCO1P42-201ENST00000457379 726 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.66□□□□□ -1.98
SDC1P18827 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.66□□□□□ -1.98
SDC1P18827 RN7SL297P-201ENST00000483161 293 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.66□□□□□ -1.98
SDC1P18827 AC005178.1-201ENST00000508392 440 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AC006445.2-201ENST00000510061 472 ntBASIC2.66□□□□□ -1.98
SDC1P18827 SNORA31.1-201ENST00000515993 133 ntBASIC2.66□□□□□ -1.98
SDC1P18827 SNORA31.5-201ENST00000516190 133 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms