Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.12□□□□□ -1.91
SIX3O95343 MTND5P13-201ENST00000513046 1079 ntBASIC3.12□□□□□ -1.91
SIX3O95343 NRON-201ENST00000517270 370 ntBASIC3.12□□□□□ -1.91
SIX3O95343 AC093331.1-201ENST00000521474 169 ntBASIC3.12□□□□□ -1.91
SIX3O95343 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX3O95343 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX3O95343 TRAV28-201ENST00000557548 323 ntBASIC3.12□□□□□ -1.91
SIX3O95343 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX3O95343 MIR4672-201ENST00000583126 81 ntBASIC3.12□□□□□ -1.91
SIX3O95343 AL591516.1-201ENST00000611326 274 ntBASIC3.12□□□□□ -1.91
SIX3O95343 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.12□□□□□ -1.91
SIX3O95343 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX3O95343 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX3O95343 AC093591.3-201ENST00000634516 308 ntBASIC3.12□□□□□ -1.91
SIX3O95343 Z83843.1-201ENST00000604070 3685 ntBASIC3.12□□□□□ -1.91
SIX3O95343 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SIX3O95343 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SIX3O95343 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SIX3O95343 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SIX3O95343 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX3O95343 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX3O95343 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX3O95343 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX3O95343 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX3O95343 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX3O95343 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SIX3O95343 RNA5SP354-201ENST00000391247 136 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AC007899.1-201ENST00000412776 775 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX3O95343 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX3O95343 ZNF863P-201ENST00000426746 417 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX3O95343 RPL32P28-201ENST00000443577 397 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX3O95343 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX3O95343 AC004263.1-201ENST00000479327 332 ntBASIC3.11□□□□□ -1.91
SIX3O95343 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SIX3O95343 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX3O95343 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX3O95343 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX3O95343 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.11□□□□□ -1.91
SIX3O95343 DEFB108A-201ENST00000530110 222 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX3O95343 AC007115.1-201ENST00000546853 234 ntBASIC3.11□□□□□ -1.91
SIX3O95343 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX3O95343 AL845331.3-202ENST00000562856 261 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX3O95343 AC008277.2-201ENST00000605196 797 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AC121334.2-201ENST00000605387 271 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX3O95343 AC100793.4-201ENST00000613683 429 ntBASIC3.11□□□□□ -1.91
SIX3O95343 uc_338.25-201ENST00000613756 156 ntBASIC3.11□□□□□ -1.91
SIX3O95343 SNHG22-203ENST00000617833 660 ntBASIC3.11□□□□□ -1.91
SIX3O95343 MIR8057-201ENST00000620957 69 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AC012150.2-201ENST00000621300 544 ntBASIC3.11□□□□□ -1.91
SIX3O95343 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX3O95343 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX3O95343 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX3O95343 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.1□□□□□ -1.91
SIX3O95343 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SIX3O95343 RNU1-33P-201ENST00000364249 162 ntBASIC3.1□□□□□ -1.91
SIX3O95343 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SIX3O95343 RPL17P12-201ENST00000413391 526 ntBASIC3.1□□□□□ -1.91
SIX3O95343 ELOCP17-201ENST00000414751 326 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.1□□□□□ -1.91
SIX3O95343 AC006366.1-201ENST00000422002 759 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.1□□□□□ -1.91
SIX3O95343 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX3O95343 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.1□□□□□ -1.91
SIX3O95343 AC129850.1-201ENST00000436203 508 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.1□□□□□ -1.91
SIX3O95343 BMI1P1-201ENST00000445879 941 ntBASIC3.1□□□□□ -1.91
SIX3O95343 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX3O95343 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.1□□□□□ -1.91
SIX3O95343 RNU7-125P-201ENST00000458760 62 ntBASIC3.1□□□□□ -1.91
SIX3O95343 RPL21P10-201ENST00000463521 490 ntBASIC3.1□□□□□ -1.91
SIX3O95343 RPS20P22-201ENST00000473700 357 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC004924.1-201ENST00000480160 781 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC233702.1-201ENST00000482905 502 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.1□□□□□ -1.91
SIX3O95343 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX3O95343 AC114797.1-201ENST00000514003 728 ntBASIC3.1□□□□□ -1.91
SIX3O95343 RNA5SP290-201ENST00000517133 127 ntBASIC3.1□□□□□ -1.91
SIX3O95343 SNORA31.21-201ENST00000517180 77 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC245166.1-201ENST00000521012 253 ntBASIC3.1□□□□□ -1.91
SIX3O95343 LRRC34P1-201ENST00000542742 915 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC008015.1-201ENST00000555505 465 ntBASIC3.1□□□□□ -1.91
SIX3O95343 LARP7P3-201ENST00000579888 337 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX3O95343 AL353778.1-201ENST00000603149 408 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC073657.2-201ENST00000605661 303 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX3O95343 AL136313.1-201ENST00000624804 202 ntBASIC3.1□□□□□ -1.91
SIX3O95343 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX3O95343 AC010149.2-201ENST00000637608 315 ntBASIC3.1□□□□□ -1.91
SIX3O95343 AC006927.3-201ENST00000638789 384 ntBASIC3.1□□□□□ -1.91
SIX3O95343 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX3O95343 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
SIX3O95343 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.91
SIX3O95343 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms