Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC096632.1-201ENST00000427395 310 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 MIR514B-201ENST00000516774 80 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 RN7SKP5-201ENST00000517045 272 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88BA6NC98 AC016727.2-201ENST00000603988 621 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 MKKS-204ENST00000639674 192 ntBASIC1.94□□□□□ -2.1
CCDC88BA6NC98 MTND4P27-201ENST00000450813 1354 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 RNU1-148P-201ENST00000384472 162 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 HMGN1P14-201ENST00000412459 517 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC88BA6NC98 PGBD4P6-201ENST00000421501 610 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC88BA6NC98 UBE2FP3-201ENST00000436366 524 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 MTCYBP12-201ENST00000440559 1134 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 AC069277.2-201ENST00000454211 432 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 RPS29P23-201ENST00000458635 123 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 AC087343.1-201ENST00000477341 475 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 OSBPL9P3-201ENST00000534523 595 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 CENPUP2-201ENST00000555897 1186 ntBASIC1.93□□□□□ -2.1
CCDC88BA6NC98 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC88BA6NC98 AC099654.7-201ENST00000635788 2127 ntBASIC1.92□□□□□ -2.1
CCDC88BA6NC98 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
CCDC88BA6NC98 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC88BA6NC98 AL513321.1-201ENST00000441175 761 ntBASIC1.92□□□□□ -2.1
CCDC88BA6NC98 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC88BA6NC98 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC88BA6NC98 RPL30P12-201ENST00000474666 353 ntBASIC1.92□□□□□ -2.1
CCDC88BA6NC98 MTATP6P22-201ENST00000507369 598 ntBASIC1.92□□□□□ -2.1
CCDC88BA6NC98 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC88BA6NC98 MIR4285-201ENST00000581001 85 ntBASIC1.92□□□□□ -2.1
CCDC88BA6NC98 AC245036.5-201ENST00000596330 847 ntBASIC1.92□□□□□ -2.1
CCDC88BA6NC98 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC88BA6NC98 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC88BA6NC98 RNA5SP38-201ENST00000410750 119 ntBASIC1.91□□□□□ -2.1
CCDC88BA6NC98 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC88BA6NC98 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC88BA6NC98 AC019176.1-201ENST00000518519 225 ntBASIC1.91□□□□□ -2.1
CCDC88BA6NC98 DUXAP5-201ENST00000529668 529 ntBASIC1.91□□□□□ -2.1
CCDC88BA6NC98 AC118942.1-201ENST00000529674 1035 ntBASIC1.91□□□□□ -2.1
CCDC88BA6NC98 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
CCDC88BA6NC98 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC88BA6NC98 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.9□□□□□ -2.1
CCDC88BA6NC98 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
CCDC88BA6NC98 RNU6-50P-201ENST00000362356 103 ntBASIC1.9□□□□□ -2.11
CCDC88BA6NC98 RNA5SP139-201ENST00000364340 117 ntBASIC1.9□□□□□ -2.11
CCDC88BA6NC98 AC016769.3-201ENST00000396562 315 ntBASIC1.9□□□□□ -2.11
CCDC88BA6NC98 AC096533.1-201ENST00000411645 353 ntBASIC1.9□□□□□ -2.11
CCDC88BA6NC98 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.9□□□□□ -2.11
CCDC88BA6NC98 AC005297.2-201ENST00000450430 606 ntBASIC1.9□□□□□ -2.11
CCDC88BA6NC98 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC88BA6NC98 MTND3P24-201ENST00000506306 329 ntBASIC1.9□□□□□ -2.11
CCDC88BA6NC98 RNU6-113P-201ENST00000516653 101 ntBASIC1.9□□□□□ -2.11
CCDC88BA6NC98 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC88BA6NC98 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC88BA6NC98 ZNF90P2-204ENST00000419323 1075 ntBASIC1.89□□□□□ -2.11
CCDC88BA6NC98 CASP1P1-201ENST00000526345 212 ntBASIC1.89□□□□□ -2.11
CCDC88BA6NC98 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC88BA6NC98 AC245128.3-201ENST00000594721 748 ntBASIC1.89□□□□□ -2.11
CCDC88BA6NC98 SNRPGP15-201ENST00000600149 222 ntBASIC1.89□□□□□ -2.11
CCDC88BA6NC98 AP003117.1-201ENST00000602771 554 ntBASIC1.89□□□□□ -2.11
CCDC88BA6NC98 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC88BA6NC98 AC097655.1-201ENST00000635075 318 ntBASIC1.89□□□□□ -2.11
CCDC88BA6NC98 AC007342.9-201ENST00000623877 1385 ntBASIC1.89□□□□□ -2.11
CCDC88BA6NC98 AC080100.1-201ENST00000624239 5356 ntBASIC1.89□□□□□ -2.11
CCDC88BA6NC98 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 SNORA18.2-201ENST00000383865 132 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 AL355497.1-201ENST00000406262 551 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 MTND2P29-201ENST00000438595 412 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 MTCO3P35-201ENST00000485582 781 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 RNA5SP436-201ENST00000516020 115 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 AC011712.1-201ENST00000588959 234 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 AL391646.1-201ENST00000603860 190 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 MIR7973-1-201ENST00000614683 76 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 AL390862.1-201ENST00000635467 1469 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 MFSD8-213ENST00000641134 1327 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 Y_RNA.36-201ENST00000362602 112 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 TPMTP3-201ENST00000411928 735 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 CYCSP33-201ENST00000414485 327 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 NAP1L4P3-201ENST00000432820 1147 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 AL139109.1-201ENST00000455491 297 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 SNRPFP3-201ENST00000457792 225 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 AC104685.1-201ENST00000502445 371 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 RNA5SP468-201ENST00000516782 93 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 RPS15AP11-201ENST00000594193 385 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 AC068620.4-201ENST00000636730 1182 ntBASIC1.88□□□□□ -2.11
CCDC88BA6NC98 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC88BA6NC98 DNAJC19P6-201ENST00000401853 280 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms