Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AL035079.1-201ENST00000405210 287 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RNA5SP36-201ENST00000410197 133 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RNU2-14P-201ENST00000411053 191 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AL445305.1-201ENST00000432577 575 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AL159987.2-201ENST00000432754 307 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC092573.2-201ENST00000434546 243 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC093414.1-201ENST00000434712 514 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RPL12P46-201ENST00000436610 195 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AL513043.1-201ENST00000439124 535 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AL590399.6-201ENST00000446396 307 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RN7SL610P-201ENST00000463845 291 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RPL9P9-202ENST00000466501 579 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 APOOP4-201ENST00000513530 597 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 RNU6-1315P-201ENST00000517187 99 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 SNORA31.22-201ENST00000517204 135 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC008033.2-201ENST00000542626 177 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 MIR3910-1-201ENST00000580936 111 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 MIR8076-201ENST00000611401 83 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 AC091905.4-201ENST00000623432 202 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 DDX18P3-201ENST00000404856 2007 ntBASIC5.29□□□□□ -1.56
USP3Q9Y6I4 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.29□□□□□ -1.56
USP3Q9Y6I4 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.105-201ENST00000363182 111 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.200-201ENST00000364018 102 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.237-201ENST00000364439 102 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 SNORA70E-201ENST00000384492 135 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 U3.42-201ENST00000408746 214 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 RNU6-130P-201ENST00000411112 103 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 RPL12P3-201ENST00000440080 396 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AL450023.3-201ENST00000440592 271 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 RPL29P29-201ENST00000448725 423 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 RPL37P6-202ENST00000464216 403 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 ENPP7P11-201ENST00000505915 627 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AC074250.1-201ENST00000511117 192 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 RNA5SP228-201ENST00000516232 133 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 NDUFB4P11-201ENST00000560510 395 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AC006484.1-201ENST00000435086 1884 ntBASIC5.28□□□□□ -1.56
USP3Q9Y6I4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.28□□□□□ -1.56
USP3Q9Y6I4 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 RNU6-263P-201ENST00000363811 107 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 RNU6-1317P-201ENST00000364582 104 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 Y_RNA.274-201ENST00000364714 101 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 SNORA51.8-201ENST00000384234 132 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 RNU4-78P-201ENST00000410940 126 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AL590762.4-201ENST00000425885 253 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AC004938.1-201ENST00000438468 308 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AL136097.1-201ENST00000456945 913 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AC140172.1-201ENST00000502928 141 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 SNORD116-26-201ENST00000516006 96 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 RNU6-1212P-201ENST00000517023 104 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 MIR2355-201ENST00000517199 87 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 FKBP1BP1-201ENST00000553366 325 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms