Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 EIF5P1-201ENST00000400019 1231 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AL356421.1-201ENST00000403255 413 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AL391417.1-201ENST00000404100 426 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 PIGPP3-201ENST00000425307 415 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AL590762.4-201ENST00000425885 253 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 RPL37P1-201ENST00000432310 284 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC133473.1-201ENST00000455173 299 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC004801.2-202ENST00000463559 283 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC083982.1-201ENST00000485679 344 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC008526.1-201ENST00000509149 338 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC018797.3-201ENST00000513388 1241 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 OR7H2P-201ENST00000513483 306 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 RNA5SP503-201ENST00000517047 117 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 SNORD116.3-201ENST00000517176 78 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC008687.2-201ENST00000597865 520 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC092447.9-201ENST00000603395 144 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC009229.3-201ENST00000608056 282 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 AL355365.1-201ENST00000616480 294 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AL161781.1-201ENST00000354277 403 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 RNU6-770P-201ENST00000363929 105 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.428-201ENST00000384078 102 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 MT-TW-201ENST00000387382 68 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 ARF4P3-201ENST00000397387 509 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AL445529.1-201ENST00000398713 389 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AL078604.1-201ENST00000404609 466 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 MTCO3P19-201ENST00000415864 321 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AL137014.1-201ENST00000420490 1226 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 RPL21P2-201ENST00000440049 481 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 RN7SL826P-201ENST00000479724 288 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 FTH1P24-201ENST00000503502 462 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC116562.3-201ENST00000506136 177 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC025465.3-201ENST00000510570 311 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 RNU6-182P-201ENST00000516970 105 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC068587.5-201ENST00000528506 175 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC092747.3-201ENST00000603769 301 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC091903.1-201ENST00000624322 454 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC027290.2-201ENST00000623210 18662 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 DHX40P1-201ENST00000588725 1412 ntBASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC39Q9UFE4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 MAPK10-253ENST00000641010 4072 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC244517.1-201ENST00000606030 2086 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.180-201ENST00000363867 113 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RNU6-82P-201ENST00000363970 107 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RNU6-200P-201ENST00000364743 107 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.291-201ENST00000364886 113 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RNY3P13-201ENST00000365542 102 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 EIF4E2P1-201ENST00000393781 255 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RNU2-38P-201ENST00000410856 79 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC068533.1-201ENST00000418542 415 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 MED13P1-201ENST00000428342 171 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 CEP57L1P1-201ENST00000430943 1201 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RPS15AP10-201ENST00000432472 382 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 TIMM9P1-201ENST00000436122 256 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 AC079804.1-201ENST00000461922 436 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 RPS26P15-201ENST00000488067 348 ntBASIC5.13□□□□□ -1.59
CCDC39Q9UFE4 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms