Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
TDP1Q9NUW8 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC004925.1-201ENST00000624256 2706 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 RNU6-552P-201ENST00000362869 119 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 Y_RNA.72-201ENST00000362894 103 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 SNORD115-7-201ENST00000365306 82 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 RNU6-701P-201ENST00000384059 107 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 SNORD37.1-201ENST00000390968 65 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 RNU6-1009P-201ENST00000390996 107 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 SOD2P1-201ENST00000396543 562 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 UBE2V1P2-201ENST00000397758 440 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 NDUFS5P1-201ENST00000405668 289 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 SNORA57.3-201ENST00000411095 141 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AL451062.2-201ENST00000427515 271 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 GOT2P5-201ENST00000433995 546 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 RPL26P6-201ENST00000440913 438 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AL645939.1-201ENST00000453429 797 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC010285.1-201ENST00000470580 392 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 RN7SL271P-201ENST00000487601 295 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 KLHL2P1-201ENST00000508691 521 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC108078.2-201ENST00000510750 236 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC010486.1-201ENST00000511793 424 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 PSMA2P1-201ENST00000526365 646 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 FGF7P1-201ENST00000582820 288 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 MIR432-201ENST00000606207 94 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 FP236240.3-201ENST00000623061 327 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 U6.114-201ENST00000636407 96 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC012442.3-202ENST00000636742 206 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AC100810.6-201ENST00000638068 285 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.13□□□□□ -1.75
TDP1Q9NUW8 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.13□□□□□ -1.75
TDP1Q9NUW8 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 RNA5SP97-201ENST00000365006 84 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 RNU6-946P-201ENST00000383878 107 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 Y_RNA.576-201ENST00000384781 102 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 RN7SKP156-201ENST00000410308 342 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 RNU2-29P-201ENST00000410423 189 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 RNU6-193P-201ENST00000410977 107 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 PDSS1P1-201ENST00000422953 1114 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 SRIP2-201ENST00000428470 166 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 MTND3P23-201ENST00000431980 347 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 NOTCH2P1-201ENST00000443481 624 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 CBWD4P-201ENST00000445695 655 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AL358232.1-201ENST00000448030 501 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 MTND3P16-201ENST00000452205 344 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AC133473.1-201ENST00000455173 299 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 PPIAP15-201ENST00000479662 484 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 RNU4-29P-201ENST00000515943 174 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 RNU6-840P-201ENST00000517275 65 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 TRMT10BP1-201ENST00000519377 943 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 ERHP1-201ENST00000523006 310 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 YPEL5P3-201ENST00000547227 352 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 FAM60BP-201ENST00000578364 658 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.12□□□□□ -1.75
TDP1Q9NUW8 AL121772.2-201ENST00000614331 297 ntBASIC4.12□□□□□ -1.75
TDP1Q9NUW8 SDR42E1P2-201ENST00000614861 481 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 162.4 ms