Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 SCOCP1-201ENST00000554676 349 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 BNIP3P25-201ENST00000596023 559 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 MIR6891-201ENST00000618788 93 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC005086.4-201ENST00000623065 213 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 AC090574.1-201ENST00000623186 233 ntBASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRIM39Q9HCM9 LARP1BP1-201ENST00000506036 1359 ntBASIC4.4□□□□□ -1.7
TRIM39Q9HCM9 AC068254.2-201ENST00000623938 3577 ntBASIC4.4□□□□□ -1.7
TRIM39Q9HCM9 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
TRIM39Q9HCM9 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TRIM39Q9HCM9 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.7
TRIM39Q9HCM9 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.4□□□□□ -1.7
TRIM39Q9HCM9 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
TRIM39Q9HCM9 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 RNA5SP52-201ENST00000362448 134 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 Y_RNA.399-201ENST00000383955 105 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 MIR607-201ENST00000385241 96 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 RNA5SP219-201ENST00000390940 113 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AL590704.1-201ENST00000402856 794 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC016397.1-201ENST00000412463 242 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 BX323014.1-201ENST00000412876 237 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AL160275.3-201ENST00000423876 471 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC011998.1-201ENST00000433403 117 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 TXNP1-201ENST00000441872 371 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC009220.1-201ENST00000451614 275 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 RPL23AP65-201ENST00000475608 468 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 RN7SL810P-201ENST00000493031 276 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC108022.1-201ENST00000493466 478 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC079140.5-201ENST00000507882 310 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC005921.1-201ENST00000510589 286 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC104136.1-201ENST00000512969 394 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 Y_RNA.691-201ENST00000516611 103 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 RANP9-201ENST00000519957 271 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 HIGD1AP5-201ENST00000529959 259 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 MIR4277-201ENST00000578298 84 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AL353621.2-201ENST00000605340 133 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC021646.1-201ENST00000605469 484 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AC103705.1-201ENST00000619013 241 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AP003400.5-201ENST00000624827 617 ntBASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
TRIM39Q9HCM9 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 MIR448-201ENST00000362131 111 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 RNA5SP151-201ENST00000365632 117 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 RNU1-63P-201ENST00000383902 164 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 MIR141-201ENST00000384975 95 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 MIR195-201ENST00000385194 87 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 AL139039.1-201ENST00000401900 692 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 BX842559.1-201ENST00000419615 532 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 CEACAMP10-202ENST00000495431 496 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 OR51K1P-201ENST00000510214 950 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 RNU6-864P-201ENST00000516256 108 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 IGLVIV-65-201ENST00000517313 360 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 MIR5692A1-201ENST00000580523 69 ntBASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
TRIM39Q9HCM9 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms