Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.42□□□□□ -2.02
CDX2Q99626 AC112206.4-201ENST00000515142 405 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 RNA5SP490-201ENST00000517141 136 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 RNU6-1261P-201ENST00000517194 104 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC2.42□□□□□ -2.02
CDX2Q99626 ERHP1-201ENST00000523006 310 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
CDX2Q99626 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.42□□□□□ -2.02
CDX2Q99626 AC008127.2-201ENST00000549925 1075 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.42□□□□□ -2.02
CDX2Q99626 COX6CP3-201ENST00000580869 223 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 AC083760.1-201ENST00000589621 670 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 AL359821.1-201ENST00000605519 182 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 AC055876.5-201ENST00000605667 259 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 RPL23AP88-201ENST00000605759 454 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 AL627309.6-201ENST00000606857 840 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 AC092954.1-201ENST00000609121 445 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC2.42□□□□□ -2.02
CDX2Q99626 AC002064.3-201ENST00000623448 346 ntBASIC2.42□□□□□ -2.02
CDX2Q99626 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CDX2Q99626 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CDX2Q99626 SGO1P2-201ENST00000429458 1589 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.41□□□□□ -2.02
CDX2Q99626 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CDX2Q99626 RNU6-1155P-201ENST00000363554 107 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CDX2Q99626 RNU2-28P-201ENST00000410457 189 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 RNA5SP38-201ENST00000410750 119 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CDX2Q99626 OR4K11P-201ENST00000431829 904 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 AC092393.1-201ENST00000439625 742 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 AL645638.1-201ENST00000440519 361 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.41□□□□□ -2.02
CDX2Q99626 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.41□□□□□ -2.02
CDX2Q99626 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.41□□□□□ -2.02
CDX2Q99626 MTCYBP16-201ENST00000509187 1129 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.41□□□□□ -2.02
CDX2Q99626 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC2.41□□□□□ -2.02
CDX2Q99626 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.41□□□□□ -2.02
CDX2Q99626 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.41□□□□□ -2.02
CDX2Q99626 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.41□□□□□ -2.02
CDX2Q99626 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 AL138955.1-201ENST00000622881 1040 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 AP002371.2-201ENST00000624450 503 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 AP003485.1-201ENST00000625093 753 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 AC084035.1-201ENST00000634543 607 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CDX2Q99626 AC092447.7-201ENST00000422212 1621 ntBASIC2.41□□□□□ -2.02
CDX2Q99626 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.02
CDX2Q99626 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
CDX2Q99626 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
CDX2Q99626 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.4□□□□□ -2.03
CDX2Q99626 AP000568.1-201ENST00000282964 442 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 Y_RNA.224-201ENST00000364308 111 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 RNU1-109P-201ENST00000383960 147 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 MIR583-201ENST00000384846 75 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 MIR221-201ENST00000385135 110 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 MIR181B1-201ENST00000385240 110 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 FO393413.1-201ENST00000402892 195 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AL136372.1-201ENST00000403060 228 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AC096533.1-201ENST00000411645 353 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.4□□□□□ -2.03
CDX2Q99626 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.4□□□□□ -2.03
CDX2Q99626 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.4□□□□□ -2.03
CDX2Q99626 RPL21P32-201ENST00000419877 477 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.4□□□□□ -2.03
CDX2Q99626 DPRXP1-201ENST00000426312 460 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AL390023.1-201ENST00000428836 262 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 MTCO1P3-201ENST00000429327 192 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.4□□□□□ -2.03
CDX2Q99626 MTND4LP10-201ENST00000435146 291 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 SDR42E1P3-201ENST00000438345 502 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AC093155.1-201ENST00000440164 826 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
CDX2Q99626 RPL23AP20-201ENST00000447965 421 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AC008427.1-201ENST00000503102 655 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AC016550.1-201ENST00000505348 785 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.4□□□□□ -2.03
CDX2Q99626 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
CDX2Q99626 Y_RNA.670-201ENST00000516255 105 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 SNORA31.8-201ENST00000516327 108 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.4□□□□□ -2.03
CDX2Q99626 OR5AK1P-201ENST00000524837 922 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
CDX2Q99626 AC106791.2-201ENST00000604680 391 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AC245517.5-201ENST00000611529 162 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 YWHAEP7-203ENST00000622054 312 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 AC104985.3-201ENST00000623479 597 ntBASIC2.4□□□□□ -2.03
CDX2Q99626 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.4□□□□□ -2.03
CDX2Q99626 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.4□□□□□ -2.03
CDX2Q99626 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC2.39□□□□□ -2.03
CDX2Q99626 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
CDX2Q99626 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CDX2Q99626 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CDX2Q99626 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CDX2Q99626 AL139276.1-201ENST00000311910 1001 ntBASIC2.39□□□□□ -2.03
CDX2Q99626 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
CDX2Q99626 RNU6-216P-201ENST00000363282 104 ntBASIC2.39□□□□□ -2.03
CDX2Q99626 RNU4-51P-201ENST00000364206 140 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms