Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC011602.1-201ENST00000546484 331 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 IMMP1LP2-201ENST00000552954 492 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC107958.1-201ENST00000556576 290 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 OR1M4P-201ENST00000589199 287 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AL589674.2-201ENST00000604304 337 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC016727.1-205ENST00000605437 569 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 HMGB1P50-201ENST00000605814 607 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RNU6-85P-201ENST00000605989 107 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AL355365.1-201ENST00000616480 294 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AL136228.1-201ENST00000622221 319 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 FAM35DP-201ENST00000323387 2712 ntBASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CLRN3Q8NCR9 SNORD3E-201ENST00000362899 217 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 Y_RNA.315-201ENST00000365117 102 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 RPL21P17-201ENST00000397467 475 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 RPS4XP3-201ENST00000398541 413 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 MIR1183-201ENST00000408856 89 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 HMGB1P9-201ENST00000429856 646 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 FABP5P14-201ENST00000437273 393 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC004938.1-201ENST00000438468 308 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AL445665.1-202ENST00000452436 324 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AL583843.1-201ENST00000456070 346 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 ACA64.1-201ENST00000459171 127 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC130509.1-201ENST00000464158 433 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC104472.2-201ENST00000469035 601 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 RPS17P15-201ENST00000475609 349 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 RN7SL170P-201ENST00000487098 295 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC139453.3-201ENST00000493276 369 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AL136038.1-201ENST00000497246 351 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC096745.1-201ENST00000509945 370 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 RN7SKP260-201ENST00000516907 149 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 MIR4776-2-201ENST00000580204 80 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC079315.1-201ENST00000602952 623 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 MIR6780B-201ENST00000610307 79 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC135507.2-201ENST00000612443 309 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC010378.1-201ENST00000619270 362 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AF117829.1-206ENST00000621883 3802 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 CR381572.2-201ENST00000624852 397 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC007656.2-201ENST00000624902 4547 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 AC012618.3-205ENST00000637896 1496 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 NCAPGP1-201ENST00000505112 1814 ntBASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CLRN3Q8NCR9 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 AL357515.1-201ENST00000402967 542 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 AL391417.1-201ENST00000404100 426 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 RNU6-293P-201ENST00000411259 106 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 HSPE1P12-201ENST00000412576 301 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 AL592148.1-201ENST00000413568 445 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 HMGN2P30-201ENST00000423237 256 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 SNRPEP4-201ENST00000435815 279 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 HLA-N-201ENST00000437516 135 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 RPL37P4-201ENST00000448908 268 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 SNORD19B-201ENST00000459623 84 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 AC084198.1-201ENST00000477747 402 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 RPS4XP20-201ENST00000505751 772 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 RNA5SP73-201ENST00000516744 108 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 RN7SKP35-201ENST00000517210 151 ntBASIC3.89□□□□□ -1.79
CLRN3Q8NCR9 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms