Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 RPL21P9-201ENST00000556149 474 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 MIR5696-201ENST00000578474 85 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AC005828.6-201ENST00000606610 232 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AC244107.2-201ENST00000611773 76 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 AC093671.1-201ENST00000624981 2929 ntBASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NPAS3Q8IXF0 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RNU6-755P-201ENST00000364400 103 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RNA5SP90-201ENST00000364801 99 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 Y_RNA.542-201ENST00000384641 111 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RNU6-476P-201ENST00000384726 107 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC013442.1-201ENST00000397347 228 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RPL30P13-201ENST00000418873 348 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC245028.1-201ENST00000423259 256 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RPS29P10-201ENST00000439197 166 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RPL34P20-201ENST00000442771 351 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RPS27AP1-201ENST00000475545 471 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 HMGB3P3-201ENST00000510526 400 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RNU6-1012P-201ENST00000516606 109 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 HMGN2P47-201ENST00000559378 272 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC008814.1-201ENST00000603797 406 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC006077.1-201ENST00000604746 343 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 SNORD113-5-201ENST00000607261 78 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 AC006206.1-201ENST00000544842 3387 ntBASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
NPAS3Q8IXF0 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 RNU4-56P-201ENST00000364700 142 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 RNU4-11P-201ENST00000365287 132 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 MIR192-201ENST00000384915 110 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 SNORD78.2-201ENST00000391076 69 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 RN7SKP114-201ENST00000410327 279 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 RNU6-516P-201ENST00000411381 104 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AC016397.1-201ENST00000412463 242 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 RN7SL197P-201ENST00000466981 299 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 RAC1P5-201ENST00000512182 576 ntBASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 DLD-214ENST00000639772 421 ntTSL 5 BASIC5.4□□□□□ -1.54
NPAS3Q8IXF0 AC005261.2-201ENST00000593427 4258 ntBASIC5.4□□□□□ -1.55
NPAS3Q8IXF0 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
NPAS3Q8IXF0 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms