Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC093331.1-201ENST00000521474 169 ntBASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 AC118273.2-201ENST00000532092 465 ntBASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 AL110118.1-201ENST00000553543 400 ntBASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 AL138976.2-201ENST00000563989 694 ntBASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 MIR15A-201ENST00000607334 83 ntBASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 AL357559.1-201ENST00000622228 274 ntBASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28AQ8IWP9 ZFRP1-201ENST00000457579 2970 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 OR4G1P-203ENST00000641984 1631 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 SNURFL-201ENST00000309296 343 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 Y_RNA.534-201ENST00000384599 112 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AL591034.1-201ENST00000407447 340 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AF186996.5-201ENST00000418098 904 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC093162.1-201ENST00000419682 124 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 TMEM167AP1-201ENST00000423409 219 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 RPL34P20-201ENST00000442771 351 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 RNU7-180P-201ENST00000459240 63 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC005532.2-201ENST00000467154 373 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 RPS15AP34-201ENST00000487776 387 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AL137161.1-201ENST00000532231 390 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC016180.1-201ENST00000567945 403 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC010525.2-201ENST00000590920 195 ntBASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 LDHA-225ENST00000625635 141 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
CCDC28AQ8IWP9 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 ZNF807-201ENST00000328088 1707 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 Y_RNA.88-201ENST00000363029 99 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 SNORA51.1-201ENST00000363243 140 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 MIR184-201ENST00000384962 84 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 RN7SKP213-201ENST00000410746 298 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AL160275.3-201ENST00000423876 471 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AL592045.1-201ENST00000429867 352 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC092573.2-201ENST00000434546 243 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 KCTD9P3-201ENST00000434597 1169 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 MTATP6P23-201ENST00000440153 476 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AL353572.1-201ENST00000442490 417 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 MTND4P18-201ENST00000447010 465 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC091885.1-201ENST00000506658 268 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC026784.1-201ENST00000507986 352 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC074344.1-201ENST00000512823 224 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC004980.4-201ENST00000513375 203 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 RNA5SP92-201ENST00000516437 110 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 RNA5SP34-201ENST00000516887 130 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 MTND4P7-201ENST00000523876 130 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AF235103.2-201ENST00000525753 346 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 MIR548S-201ENST00000581352 82 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC006116.3-201ENST00000592968 361 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 RMST_8.1-201ENST00000610287 165 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms