Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SNORA62.1-201ENST00000364287 154 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 SNORA64-201ENST00000384674 134 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AL136372.1-201ENST00000403060 228 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 RPL23AP36-201ENST00000413895 458 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC009963.1-201ENST00000417265 157 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC092648.1-201ENST00000425870 423 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC099513.1-201ENST00000490423 301 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC147055.4-201ENST00000504399 745 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC008494.2-201ENST00000514544 370 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 COX6B1P6-201ENST00000522347 255 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 MIR502-201ENST00000606349 86 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AC103810.9-201ENST00000606688 112 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AP000254.1-201ENST00000609934 520 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AL590410.1-201ENST00000617925 333 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 FRG1HP-204ENST00000617940 757 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AL445493.3-201ENST00000619568 477 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AL353748.2-201ENST00000622148 471 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 MIR7157-201ENST00000635801 60 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 MTND4P23-201ENST00000447723 1363 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC0.79□□□□□ -2.28
LINC00643Q86TS7 AK9-203ENST00000368948 2478 ntTSL 5 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 MIR554-201ENST00000384874 96 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 MIR200C-201ENST00000384980 68 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 U3.26-201ENST00000391236 204 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 RNU6-272P-201ENST00000411028 104 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 RN7SKP263-201ENST00000411194 309 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC099548.1-201ENST00000421443 426 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC092047.1-201ENST00000424997 240 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AL354695.1-201ENST00000427935 228 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 MICF-203ENST00000432679 129 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 RPL7P54-201ENST00000438336 674 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC096638.1-201ENST00000444678 216 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 PRSS3P4-201ENST00000453323 162 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 HMGN2P23-201ENST00000456759 269 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 S100A11P2-201ENST00000467589 312 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 RN7SL432P-201ENST00000484057 298 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 HMGB1P35-201ENST00000503360 598 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 SCARNA3-201ENST00000517097 143 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AP001646.1-201ENST00000527936 915 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AP001317.1-201ENST00000531194 960 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AK6P1-201ENST00000540219 478 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC021646.1-201ENST00000605469 484 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC093838.1-201ENST00000613014 469 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 Z99571.1-201ENST00000636677 394 ntBASIC0.78□□□□□ -2.28
LINC00643Q86TS7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
LINC00643Q86TS7 AC007785.2-201ENST00000598627 1916 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 OR5J1P-201ENST00000313544 939 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 SNORD14B-201ENST00000364533 90 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 RNU6-748P-201ENST00000384648 107 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 MIR30A-201ENST00000385092 71 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 MIR618-201ENST00000385287 98 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AL591704.2-201ENST00000421658 181 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 NDUFA5P10-201ENST00000432147 357 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 HMGB1P31-201ENST00000437242 427 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC004866.2-201ENST00000438285 481 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC080013.2-201ENST00000460866 323 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC132942.1-201ENST00000486753 483 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 OR5H5P-201ENST00000503164 928 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 LEF1-218ENST00000512172 598 ntTSL 2 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 RNA5SP182-201ENST00000516064 82 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 RNU1-45P-201ENST00000517191 141 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 DUXAP5-201ENST00000529668 529 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC092470.1-201ENST00000546187 132 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC019288.1-201ENST00000557918 224 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms