Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC1.16□□□□□ -2.22
CHD9Q3L8U1 RPL31P41-201ENST00000477967 372 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 AC023050.1-201ENST00000498198 304 ntBASIC1.16□□□□□ -2.22
CHD9Q3L8U1 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.16□□□□□ -2.22
CHD9Q3L8U1 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
CHD9Q3L8U1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
CHD9Q3L8U1 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC1.15□□□□□ -2.22
CHD9Q3L8U1 AC009965.2-201ENST00000425328 970 ntBASIC1.15□□□□□ -2.22
CHD9Q3L8U1 AC079776.3-201ENST00000450665 370 ntBASIC1.15□□□□□ -2.22
CHD9Q3L8U1 AC146507.1-201ENST00000468335 354 ntBASIC1.15□□□□□ -2.22
CHD9Q3L8U1 AC105245.1-201ENST00000581934 244 ntBASIC1.15□□□□□ -2.22
CHD9Q3L8U1 AP001180.3-201ENST00000582221 145 ntBASIC1.15□□□□□ -2.22
CHD9Q3L8U1 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
CHD9Q3L8U1 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.23
CHD9Q3L8U1 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.15□□□□□ -2.23
CHD9Q3L8U1 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.15□□□□□ -2.23
CHD9Q3L8U1 AC103810.8-201ENST00000607347 118 ntBASIC1.15□□□□□ -2.23
CHD9Q3L8U1 AC010487.4-201ENST00000637027 61 ntBASIC1.15□□□□□ -2.23
CHD9Q3L8U1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.15□□□□□ -2.23
CHD9Q3L8U1 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.15□□□□□ -2.23
CHD9Q3L8U1 MIR193B-201ENST00000384907 83 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 MIR591-201ENST00000385290 95 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 DUXAP8-207ENST00000456786 622 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 HMGB3P30-201ENST00000457863 606 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC092451.2-201ENST00000538746 658 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 CR383656.8-201ENST00000549046 145 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 MIR4474-201ENST00000579189 78 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC018754.1-201ENST00000607486 925 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 MFSD8-213ENST00000641134 1327 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 MTCO1P43-201ENST00000431831 488 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AL121601.2-201ENST00000438019 707 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 RPS26P21-201ENST00000475397 348 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC023424.2-201ENST00000493479 777 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 EFTUD1P2-201ENST00000514817 1603 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC135776.4-201ENST00000624300 1904 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 PTGES3P5-201ENST00000455109 434 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC105036.1-201ENST00000566222 271 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AL512605.2-201ENST00000592972 256 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AL627230.5-201ENST00000619807 58 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 AC116618.1-201ENST00000634617 774 ntBASIC1.14□□□□□ -2.23
CHD9Q3L8U1 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 RN7SKP51-201ENST00000410781 304 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AC074117.2-201ENST00000417130 397 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 ELOCP6-201ENST00000429066 328 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AC098934.3-201ENST00000430450 190 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 ELOCP12-201ENST00000458706 328 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 MIR5694-201ENST00000581190 76 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 LLPHP1-201ENST00000603571 367 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AL020996.3-201ENST00000606617 222 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AC016877.3-201ENST00000606778 504 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AC130650.2-201ENST00000618736 2403 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AP000676.4-201ENST00000624659 623 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AP000567.1-201ENST00000406413 156 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 PSMA2P3-201ENST00000429685 675 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 FTH1P12-201ENST00000432137 551 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 RNU6-1218P-201ENST00000458990 108 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 FAM106CP-201ENST00000582212 507 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 U73023.1-201ENST00000603134 700 ntBASIC1.13□□□□□ -2.23
CHD9Q3L8U1 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.13□□□□□ -2.23
CHD9Q3L8U1 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 U3.40-201ENST00000408706 208 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 RNA5SP127-201ENST00000411051 133 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 DPPA2P1-201ENST00000428060 556 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 AC233266.2-201ENST00000567067 528 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 SNHG22-203ENST00000617833 660 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 AL137003.2-201ENST00000606924 2538 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 AC004941.2-201ENST00000427009 228 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 MTND5P25-201ENST00000430499 799 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 DPPA3P1-201ENST00000448050 469 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC1.12□□□□□ -2.23
CHD9Q3L8U1 RNA5SP364-201ENST00000516938 78 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 AC103833.1-201ENST00000517442 172 ntBASIC1.12□□□□□ -2.23
CHD9Q3L8U1 DUXAP3-201ENST00000603616 594 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms