Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC006270.2-201ENST00000578523 652 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 uc_338.12-201ENST00000616344 181 ntBASIC0.88□□□□□ -2.27
COL7A1Q02388 AP002907.1-201ENST00000606361 1430 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
COL7A1Q02388 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
COL7A1Q02388 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
COL7A1Q02388 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
COL7A1Q02388 Y_RNA.549-201ENST00000384657 102 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 RNA5SP354-201ENST00000391247 136 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC0.87□□□□□ -2.27
COL7A1Q02388 Z85994.2-201ENST00000434327 452 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC0.87□□□□□ -2.27
COL7A1Q02388 AC022493.1-201ENST00000492984 337 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 RPL21P131-201ENST00000497298 483 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 AC022447.3-201ENST00000506865 495 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 RNU4-60P-201ENST00000517239 135 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 AC239860.2-201ENST00000525886 270 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 IMMP1LP2-201ENST00000552954 492 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 HSPE1P3-201ENST00000559254 309 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC0.87□□□□□ -2.27
COL7A1Q02388 HSPE1P14-201ENST00000605812 302 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
COL7A1Q02388 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.87□□□□□ -2.27
COL7A1Q02388 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC0.87□□□□□ -2.27
COL7A1Q02388 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC0.87□□□□□ -2.27
COL7A1Q02388 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC0.87□□□□□ -2.27
COL7A1Q02388 AC090096.1-201ENST00000489168 390 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 RNU6-1334P-201ENST00000516032 105 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC0.87□□□□□ -2.27
COL7A1Q02388 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC0.87□□□□□ -2.27
COL7A1Q02388 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC0.87□□□□□ -2.27
COL7A1Q02388 AC005034.5-201ENST00000604219 466 ntBASIC0.87□□□□□ -2.27
COL7A1Q02388 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC0.87□□□□□ -2.27
COL7A1Q02388 AP000560.1-201ENST00000624150 1937 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
COL7A1Q02388 RNA5SP492-201ENST00000411330 114 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 CST2P1-201ENST00000425770 87 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 AC004022.1-201ENST00000447766 1066 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC0.86□□□□□ -2.27
COL7A1Q02388 HAUS1P1-201ENST00000505275 832 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.86□□□□□ -2.27
COL7A1Q02388 AC139103.1-201ENST00000534696 1030 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC0.86□□□□□ -2.27
COL7A1Q02388 MIR3973-201ENST00000579824 107 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC0.86□□□□□ -2.27
COL7A1Q02388 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
COL7A1Q02388 Y_RNA.324-201ENST00000365165 102 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 AL030996.1-201ENST00000411430 235 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC0.86□□□□□ -2.27
COL7A1Q02388 AL591212.2-201ENST00000433923 257 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 UBE2V1P13-201ENST00000436983 439 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 AL121871.1-201ENST00000443413 436 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 AC022431.1-201ENST00000450941 438 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 MTCO1P30-201ENST00000515244 580 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 IGLVVI-22-1-201ENST00000521183 211 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 MTND5P9-201ENST00000503854 1755 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 RLIMP2-201ENST00000427891 1563 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 AC123912.3-201ENST00000600907 1367 ntBASIC0.86□□□□□ -2.27
COL7A1Q02388 SNORA18.2-201ENST00000383865 132 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 MORF4L1P7-201ENST00000426038 703 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 OR9N1P-202ENST00000494289 481 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 SNX5P1-201ENST00000505757 1041 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC0.85□□□□□ -2.27
COL7A1Q02388 AP004242.1-201ENST00000533701 349 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC0.85□□□□□ -2.27
COL7A1Q02388 DBF4P1-201ENST00000412976 1892 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AC135776.4-201ENST00000624300 1904 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AC011155.1-201ENST00000316512 456 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.85□□□□□ -2.27
COL7A1Q02388 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC0.85□□□□□ -2.27
COL7A1Q02388 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC0.85□□□□□ -2.27
COL7A1Q02388 MTCYBP35-201ENST00000503630 1137 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AC021755.4-201ENST00000616620 456 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AL109933.3-201ENST00000619095 188 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
COL7A1Q02388 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC0.85□□□□□ -2.27
COL7A1Q02388 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
COL7A1Q02388 RNA5SP465-201ENST00000391195 109 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC0.85□□□□□ -2.27
COL7A1Q02388 AC099336.2-201ENST00000422457 254 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 CR848007.2-201ENST00000424918 787 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AL360221.1-201ENST00000445989 335 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AC012170.1-201ENST00000495139 359 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC0.85□□□□□ -2.27
COL7A1Q02388 AC093752.1-206ENST00000511823 336 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 RNA5SP364-201ENST00000516938 78 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 MIR4716-201ENST00000579628 84 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 AL356118.1-201ENST00000635272 1078 ntBASIC0.85□□□□□ -2.27
COL7A1Q02388 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
COL7A1Q02388 MIR144-201ENST00000384886 86 ntBASIC0.84□□□□□ -2.27
COL7A1Q02388 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC0.84□□□□□ -2.27
COL7A1Q02388 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.84□□□□□ -2.27
COL7A1Q02388 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC0.84□□□□□ -2.27
COL7A1Q02388 HMGB3P21-201ENST00000452483 547 ntBASIC0.84□□□□□ -2.27
COL7A1Q02388 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC0.84□□□□□ -2.27
COL7A1Q02388 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC0.84□□□□□ -2.27
COL7A1Q02388 AC023790.1-201ENST00000482174 347 ntBASIC0.84□□□□□ -2.27
COL7A1Q02388 AC093801.2-201ENST00000503966 1050 ntBASIC0.84□□□□□ -2.27
COL7A1Q02388 MIR514B-201ENST00000516774 80 ntBASIC0.84□□□□□ -2.27
COL7A1Q02388 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms