Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU6-1029P-201ENST00000384109 107 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 RNU6-574P-201ENST00000384265 107 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 RNU6-196P-201ENST00000384315 107 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AL358176.2-201ENST00000425769 204 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.02□□□□□ -1.77
COL4A3Q01955 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A3Q01955 RPL23AP89-201ENST00000439324 255 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AC107399.1-201ENST00000451226 265 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 RPS29P15-201ENST00000458329 171 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 VN1R17P-201ENST00000472048 1090 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 ST13P14-201ENST00000474095 734 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AC083904.1-201ENST00000487828 231 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AC116562.3-201ENST00000506136 177 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AC093303.1-201ENST00000514549 295 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 snoU109.6-201ENST00000516831 118 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 RNU6-1088P-201ENST00000516850 104 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 MTND4P7-201ENST00000523876 130 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AC068587.5-201ENST00000528506 175 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A3Q01955 AL358913.1-201ENST00000554342 121 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 DNAJC8P1-201ENST00000554535 372 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.02□□□□□ -1.77
COL4A3Q01955 AL022099.1-201ENST00000604551 712 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 CTHRC1P1-201ENST00000605383 469 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.02□□□□□ -1.77
COL4A3Q01955 uc_338.22-201ENST00000622722 187 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A3Q01955 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.02□□□□□ -1.77
COL4A3Q01955 MTCO1P7-201ENST00000419523 1542 ntBASIC4.02□□□□□ -1.77
COL4A3Q01955 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
COL4A3Q01955 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL4A3Q01955 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A3Q01955 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A3Q01955 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 RNU1-15P-201ENST00000353977 144 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 Y_RNA.22-201ENST00000362492 102 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 RNU6-552P-201ENST00000362869 119 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 SNORA62.1-201ENST00000364287 154 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 Y_RNA.234-201ENST00000364409 97 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 RNU6-1105P-201ENST00000384774 107 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 AL356057.3-201ENST00000402607 340 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A3Q01955 Z95327.2-201ENST00000414579 1873 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A3Q01955 HSPD1P21-201ENST00000436541 245 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A3Q01955 RPL32P28-201ENST00000443577 397 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A3Q01955 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 AC108059.3-201ENST00000456388 214 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 AP001486.1-201ENST00000463339 476 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A3Q01955 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.01□□□□□ -1.77
COL4A3Q01955 AC020893.1-201ENST00000502452 580 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 RNU6-566P-201ENST00000516790 107 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A3Q01955 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A3Q01955 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 AC006270.2-201ENST00000578523 652 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 MIR5690-201ENST00000583739 73 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.01□□□□□ -1.77
COL4A3Q01955 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.01□□□□□ -1.77
COL4A3Q01955 AC092079.1-201ENST00000558620 1985 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL4A3Q01955 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL4A3Q01955 AL356274.2-201ENST00000624379 3752 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 AP001284.1-201ENST00000528393 2118 ntBASIC4.01□□□□□ -1.77
COL4A3Q01955 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.01□□□□□ -1.77
COL4A3Q01955 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
COL4A3Q01955 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4□□□□□ -1.77
COL4A3Q01955 MIR19A-201ENST00000384878 82 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AL592114.1-201ENST00000403842 483 ntBASIC4□□□□□ -1.77
COL4A3Q01955 Y_RNA.605-201ENST00000410577 105 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AL590609.2-201ENST00000421430 368 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AL031736.2-201ENST00000426573 787 ntBASIC4□□□□□ -1.77
COL4A3Q01955 HLA-N-201ENST00000437516 135 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RAC1P7-201ENST00000445367 377 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4□□□□□ -1.77
COL4A3Q01955 SNRPFP3-201ENST00000457792 225 ntBASIC4□□□□□ -1.77
COL4A3Q01955 ALDH7A1P3-201ENST00000492517 345 ntBASIC4□□□□□ -1.77
COL4A3Q01955 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL4A3Q01955 AC068305.1-201ENST00000497406 726 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RN7SKP24-201ENST00000515888 284 ntBASIC4□□□□□ -1.77
COL4A3Q01955 RNU6-988P-201ENST00000519081 107 ntBASIC4□□□□□ -1.77
COL4A3Q01955 HMGB1P41-201ENST00000520234 440 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4□□□□□ -1.77
COL4A3Q01955 AC022695.1-201ENST00000522089 237 ntBASIC4□□□□□ -1.77
COL4A3Q01955 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4□□□□□ -1.77
COL4A3Q01955 AL163153.1-201ENST00000554223 283 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4□□□□□ -1.77
COL4A3Q01955 AC025627.2-201ENST00000576220 160 ntBASIC4□□□□□ -1.77
COL4A3Q01955 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4□□□□□ -1.77
COL4A3Q01955 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4□□□□□ -1.77
COL4A3Q01955 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms