Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RPL7P43-201ENST00000478876 753 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA4Q00056 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA4Q00056 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA4Q00056 OR51K1P-201ENST00000510214 950 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXA4Q00056 AC015795.1-201ENST00000513669 327 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXA4Q00056 AC100770.1-201ENST00000532310 322 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA4Q00056 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA4Q00056 AC092747.3-201ENST00000603769 301 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 DPPA3P3-201ENST00000603842 430 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AL592436.1-201ENST00000605135 558 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC245389.1-201ENST00000605141 529 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AL365204.3-201ENST00000612448 685 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC012409.4-201ENST00000612923 249 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA4Q00056 AC019278.1-201ENST00000623516 479 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 AL359757.2-201ENST00000624309 274 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 MIR6830-201ENST00000636015 70 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 MTND4LP32-201ENST00000636111 270 ntBASIC3.59□□□□□ -1.83
HOXA4Q00056 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA4Q00056 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA4Q00056 AC103710.2-202ENST00000641454 2853 ntBASIC3.59□□□□□ -1.84
HOXA4Q00056 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
HOXA4Q00056 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.59□□□□□ -1.84
HOXA4Q00056 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.59□□□□□ -1.84
HOXA4Q00056 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA4Q00056 MTND5P3-201ENST00000438536 1800 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA4Q00056 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA4Q00056 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA4Q00056 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA4Q00056 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
HOXA4Q00056 RNU1-14P-201ENST00000362759 152 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 RNA5SP443-201ENST00000363083 132 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 RNU6-82P-201ENST00000363970 107 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 RNU6-76P-201ENST00000384060 104 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 RNU6-629P-201ENST00000384061 103 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 RNU6-1013P-201ENST00000384180 107 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 RNA5SP372-201ENST00000390836 115 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC079780.1-201ENST00000428259 207 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC236972.2-201ENST00000434979 310 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC005019.1-201ENST00000436455 431 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AC073587.1-201ENST00000447093 876 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 ABCF2P2-201ENST00000450549 296 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AC105137.1-201ENST00000484355 562 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC108022.1-201ENST00000493466 478 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AP001086.1-201ENST00000494882 321 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AC104164.2-201ENST00000496953 495 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXA4Q00056 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA4Q00056 AC018630.1-201ENST00000541376 925 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 RN7SL176P-201ENST00000580352 264 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 MIR3672-201ENST00000584290 82 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC104662.1-201ENST00000604448 511 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 Y_RNA.812-201ENST00000610788 101 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 Y_RNA.784-201ENST00000613803 101 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 Y_RNA.787-201ENST00000616522 101 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 Y_RNA.780-201ENST00000617336 101 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AL445567.2-201ENST00000618935 498 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 Y_RNA.801-201ENST00000619005 101 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA4Q00056 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA4Q00056 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA4Q00056 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA4Q00056 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
HOXA4Q00056 AL137003.2-201ENST00000606924 2538 ntBASIC3.58□□□□□ -1.84
HOXA4Q00056 AC125257.1-201ENST00000560400 2930 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA4Q00056 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
HOXA4Q00056 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
HOXA4Q00056 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA4Q00056 RNU6-254P-201ENST00000363377 107 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 Y_RNA.162-201ENST00000363683 102 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 Y_RNA.579-201ENST00000390939 94 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 SNORD70.1-201ENST00000391007 85 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 MIR548F5-201ENST00000408421 86 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 RNU6-1304P-201ENST00000411374 106 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 RNA5SP111-201ENST00000411386 101 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AF228730.4-201ENST00000421457 183 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 PDSS1P1-201ENST00000422953 1114 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AL353729.1-201ENST00000425044 720 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 CALM2P2-201ENST00000428512 440 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXA4Q00056 NUTF2P3-201ENST00000448540 384 ntBASIC3.57□□□□□ -1.84
HOXA4Q00056 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 141.6 ms