Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC007938.3-201ENST00000604965 623 ntBASIC4.94□□□□□ -1.62
LIG3P49916 Z98200.1-201ENST00000607298 470 ntBASIC4.94□□□□□ -1.62
LIG3P49916 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.94□□□□□ -1.62
LIG3P49916 7SK.10-201ENST00000621414 298 ntBASIC4.94□□□□□ -1.62
LIG3P49916 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.94□□□□□ -1.62
LIG3P49916 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.94□□□□□ -1.62
LIG3P49916 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.94□□□□□ -1.62
LIG3P49916 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIG3P49916 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
LIG3P49916 AC022893.2-201ENST00000564832 3296 ntBASIC4.94□□□□□ -1.62
LIG3P49916 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
LIG3P49916 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.94□□□□□ -1.62
LIG3P49916 MTND4P1-201ENST00000457501 1466 ntBASIC4.94□□□□□ -1.62
LIG3P49916 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.93□□□□□ -1.62
LIG3P49916 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 RNA5SP52-201ENST00000362448 134 ntBASIC4.93□□□□□ -1.62
LIG3P49916 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 RNU6-890P-201ENST00000384121 107 ntBASIC4.93□□□□□ -1.62
LIG3P49916 Y_RNA.480-201ENST00000384364 102 ntBASIC4.93□□□□□ -1.62
LIG3P49916 RNU6-1105P-201ENST00000384774 107 ntBASIC4.93□□□□□ -1.62
LIG3P49916 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 NRBF2P3-201ENST00000432731 865 ntBASIC4.93□□□□□ -1.62
LIG3P49916 AL049745.1-201ENST00000433953 286 ntBASIC4.93□□□□□ -1.62
LIG3P49916 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.93□□□□□ -1.62
LIG3P49916 RPL21P41-201ENST00000459863 264 ntBASIC4.93□□□□□ -1.62
LIG3P49916 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.93□□□□□ -1.62
LIG3P49916 RN7SL41P-201ENST00000476144 297 ntBASIC4.93□□□□□ -1.62
LIG3P49916 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.93□□□□□ -1.62
LIG3P49916 RNA5SP392-201ENST00000516905 112 ntBASIC4.93□□□□□ -1.62
LIG3P49916 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.93□□□□□ -1.62
LIG3P49916 AC025423.5-201ENST00000550230 219 ntBASIC4.93□□□□□ -1.62
LIG3P49916 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.93□□□□□ -1.62
LIG3P49916 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.93□□□□□ -1.62
LIG3P49916 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.93□□□□□ -1.62
LIG3P49916 AC005951.2-201ENST00000576282 495 ntBASIC4.93□□□□□ -1.62
LIG3P49916 MIR5692A1-201ENST00000580523 69 ntBASIC4.93□□□□□ -1.62
LIG3P49916 AC012119.1-201ENST00000603184 222 ntBASIC4.93□□□□□ -1.62
LIG3P49916 AC018462.2-201ENST00000605375 395 ntBASIC4.93□□□□□ -1.62
LIG3P49916 RNA5SP108-201ENST00000605921 117 ntBASIC4.93□□□□□ -1.62
LIG3P49916 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.93□□□□□ -1.62
LIG3P49916 MIR15A-201ENST00000607334 83 ntBASIC4.93□□□□□ -1.62
LIG3P49916 AC009229.3-201ENST00000608056 282 ntBASIC4.93□□□□□ -1.62
LIG3P49916 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 PLCE1P1-201ENST00000622094 305 ntBASIC4.93□□□□□ -1.62
LIG3P49916 SAMMSON-226ENST00000642089 1582 ntBASIC4.93□□□□□ -1.62
LIG3P49916 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.93□□□□□ -1.62
LIG3P49916 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.93□□□□□ -1.62
LIG3P49916 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
LIG3P49916 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.93□□□□□ -1.62
LIG3P49916 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIG3P49916 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
LIG3P49916 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LIG3P49916 AC074029.4-201ENST00000624796 1859 ntBASIC4.92□□□□□ -1.62
LIG3P49916 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG3P49916 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIG3P49916 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG3P49916 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
LIG3P49916 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG3P49916 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG3P49916 Y_RNA.5-201ENST00000362334 102 ntBASIC4.92□□□□□ -1.62
LIG3P49916 SNORA73.1-201ENST00000363107 205 ntBASIC4.92□□□□□ -1.62
LIG3P49916 Y_RNA.133-201ENST00000363428 110 ntBASIC4.92□□□□□ -1.62
LIG3P49916 RNU6-95P-201ENST00000384697 107 ntBASIC4.92□□□□□ -1.62
LIG3P49916 RNU6-1050P-201ENST00000410388 107 ntBASIC4.92□□□□□ -1.62
LIG3P49916 BX842559.1-201ENST00000419615 532 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AL358176.2-201ENST00000425769 204 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG3P49916 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.92□□□□□ -1.62
LIG3P49916 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG3P49916 RPL26P6-201ENST00000440913 438 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG3P49916 AL359073.1-201ENST00000448036 403 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG3P49916 RPL23AP56-201ENST00000460778 453 ntBASIC4.92□□□□□ -1.62
LIG3P49916 RPS17P2-201ENST00000461663 408 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG3P49916 RPS23P1-201ENST00000491662 432 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AC096745.1-201ENST00000509945 370 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.92□□□□□ -1.62
LIG3P49916 RNA5SP154-201ENST00000516193 111 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG3P49916 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG3P49916 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG3P49916 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG3P49916 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.92□□□□□ -1.62
LIG3P49916 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG3P49916 MTND6P33-201ENST00000571794 183 ntBASIC4.92□□□□□ -1.62
LIG3P49916 RPL23AP87-202ENST00000573039 466 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.92□□□□□ -1.62
LIG3P49916 AC011890.2-201ENST00000613393 294 ntBASIC4.92□□□□□ -1.62
LIG3P49916 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.92□□□□□ -1.62
LIG3P49916 AC015967.1-201ENST00000619893 476 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms