Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KLKP1-201ENST00000595979 403 ntBASIC2.93□□□□□ -1.94
CDX1P47902 CLIC4P2-201ENST00000601934 717 ntBASIC2.93□□□□□ -1.94
CDX1P47902 AL137849.1-201ENST00000604767 169 ntBASIC2.93□□□□□ -1.94
CDX1P47902 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.93□□□□□ -1.94
CDX1P47902 AC239868.4-201ENST00000608318 671 ntBASIC2.93□□□□□ -1.94
CDX1P47902 AL161629.2-201ENST00000615347 275 ntBASIC2.93□□□□□ -1.94
CDX1P47902 AC039056.2-201ENST00000622261 511 ntBASIC2.93□□□□□ -1.94
CDX1P47902 AC012442.3-202ENST00000636742 206 ntBASIC2.93□□□□□ -1.94
CDX1P47902 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
CDX1P47902 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.92□□□□□ -1.94
CDX1P47902 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CDX1P47902 RNU6-270P-201ENST00000364131 105 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AL359837.1-201ENST00000381357 287 ntBASIC2.92□□□□□ -1.94
CDX1P47902 CD24P4-201ENST00000382840 243 ntBASIC2.92□□□□□ -1.94
CDX1P47902 RNU6-198P-201ENST00000384258 104 ntBASIC2.92□□□□□ -1.94
CDX1P47902 RNU6-140P-201ENST00000384566 108 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.92□□□□□ -1.94
CDX1P47902 AL589872.1-201ENST00000426602 288 ntBASIC2.92□□□□□ -1.94
CDX1P47902 ZNF863P-201ENST00000426746 417 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AC137499.1-201ENST00000427602 88 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.92□□□□□ -1.94
CDX1P47902 AC129850.1-201ENST00000436203 508 ntBASIC2.92□□□□□ -1.94
CDX1P47902 VN1R34P-201ENST00000447387 883 ntBASIC2.92□□□□□ -1.94
CDX1P47902 MTND1P12-201ENST00000455231 147 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.92□□□□□ -1.94
CDX1P47902 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.92□□□□□ -1.94
CDX1P47902 AC013267.1-201ENST00000458227 267 ntBASIC2.92□□□□□ -1.94
CDX1P47902 SNORD97-201ENST00000459187 142 ntBASIC2.92□□□□□ -1.94
CDX1P47902 MTND4LP3-201ENST00000468320 276 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AC084198.1-201ENST00000477747 402 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC2.92□□□□□ -1.94
CDX1P47902 AC093663.1-201ENST00000497190 394 ntBASIC2.92□□□□□ -1.94
CDX1P47902 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.92□□□□□ -1.94
CDX1P47902 RNU1-95P-201ENST00000516357 160 ntBASIC2.92□□□□□ -1.94
CDX1P47902 Y_RNA.688-201ENST00000516565 95 ntBASIC2.92□□□□□ -1.94
CDX1P47902 SNORA64.4-201ENST00000516632 81 ntBASIC2.92□□□□□ -1.94
CDX1P47902 RNU1-128P-201ENST00000516704 160 ntBASIC2.92□□□□□ -1.94
CDX1P47902 RNA5SP290-201ENST00000517133 127 ntBASIC2.92□□□□□ -1.94
CDX1P47902 RANP9-201ENST00000519957 271 ntBASIC2.92□□□□□ -1.94
CDX1P47902 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
CDX1P47902 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.92□□□□□ -1.94
CDX1P47902 DNAJC8P1-201ENST00000554535 372 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.92□□□□□ -1.94
CDX1P47902 AC008739.3-201ENST00000603262 127 ntBASIC2.92□□□□□ -1.94
CDX1P47902 Z94722.1-201ENST00000604328 474 ntBASIC2.92□□□□□ -1.94
CDX1P47902 SNORA62.6-201ENST00000606322 83 ntBASIC2.92□□□□□ -1.94
CDX1P47902 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.92□□□□□ -1.94
CDX1P47902 AC008250.2-201ENST00000615261 205 ntBASIC2.92□□□□□ -1.94
CDX1P47902 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC2.92□□□□□ -1.94
CDX1P47902 AP003122.6-201ENST00000623831 495 ntBASIC2.92□□□□□ -1.94
CDX1P47902 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.92□□□□□ -1.94
CDX1P47902 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CDX1P47902 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CDX1P47902 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CDX1P47902 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CDX1P47902 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC2.91□□□□□ -1.94
CDX1P47902 ELL2P3-201ENST00000457883 1602 ntBASIC2.91□□□□□ -1.94
CDX1P47902 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
CDX1P47902 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CDX1P47902 U3.11-201ENST00000364476 212 ntBASIC2.91□□□□□ -1.94
CDX1P47902 Y_RNA.245-201ENST00000364493 95 ntBASIC2.91□□□□□ -1.94
CDX1P47902 U8.11-201ENST00000384699 133 ntBASIC2.91□□□□□ -1.94
CDX1P47902 U8.12-201ENST00000384701 133 ntBASIC2.91□□□□□ -1.94
CDX1P47902 MIR449B-201ENST00000384995 97 ntBASIC2.91□□□□□ -1.94
CDX1P47902 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CDX1P47902 SNORA40.3-201ENST00000390964 122 ntBASIC2.91□□□□□ -1.94
CDX1P47902 RNA5SP424-201ENST00000390988 115 ntBASIC2.91□□□□□ -1.94
CDX1P47902 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CDX1P47902 RNU2-8P-201ENST00000410727 190 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC099548.1-201ENST00000421443 426 ntBASIC2.91□□□□□ -1.94
CDX1P47902 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.91□□□□□ -1.94
CDX1P47902 AC098826.1-201ENST00000433943 471 ntBASIC2.91□□□□□ -1.94
CDX1P47902 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CDX1P47902 HMGB3P11-201ENST00000440127 604 ntBASIC2.91□□□□□ -1.94
CDX1P47902 USP9YP15-201ENST00000442391 422 ntBASIC2.91□□□□□ -1.94
CDX1P47902 TAF9P1-201ENST00000445421 515 ntBASIC2.91□□□□□ -1.94
CDX1P47902 RPS3AP46-201ENST00000448352 682 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC009961.3-201ENST00000449832 765 ntBASIC2.91□□□□□ -1.94
CDX1P47902 TAF9P2-201ENST00000454958 515 ntBASIC2.91□□□□□ -1.94
CDX1P47902 RNA5SP269-201ENST00000459032 137 ntBASIC2.91□□□□□ -1.94
CDX1P47902 U8.18-201ENST00000459285 133 ntBASIC2.91□□□□□ -1.94
CDX1P47902 snoU109.1-201ENST00000459339 135 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC091179.1-201ENST00000461606 579 ntBASIC2.91□□□□□ -1.94
CDX1P47902 RPL21P8-201ENST00000465083 535 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC2.91□□□□□ -1.94
CDX1P47902 AC023598.1-201ENST00000472521 361 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC068724.1-201ENST00000487100 792 ntBASIC2.91□□□□□ -1.94
CDX1P47902 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.91□□□□□ -1.94
CDX1P47902 SLC25A15P5-201ENST00000508033 253 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC091965.2-201ENST00000512324 613 ntBASIC2.91□□□□□ -1.94
CDX1P47902 Y_RNA.672-201ENST00000516289 104 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.91□□□□□ -1.94
CDX1P47902 AP003122.4-201ENST00000530980 758 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.91□□□□□ -1.94
CDX1P47902 ARL2BPP2-201ENST00000550907 489 ntBASIC2.91□□□□□ -1.94
CDX1P47902 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.91□□□□□ -1.94
CDX1P47902 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.91□□□□□ -1.94
CDX1P47902 IGKV2OR2-8-201ENST00000558710 300 ntBASIC2.91□□□□□ -1.94
CDX1P47902 AC006960.3-201ENST00000561845 705 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms