Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HNF4AP41235 MTND4P16-201ENST00000466108 1367 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AC007785.2-201ENST00000598627 1916 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
HNF4AP41235 MIR325-201ENST00000385260 98 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 Z85995.1-201ENST00000415547 335 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 AC245291.1-201ENST00000419501 328 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 HMGN2P30-201ENST00000423237 256 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AC012498.1-201ENST00000424037 437 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.25□□□□□ -1.89
HNF4AP41235 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.25□□□□□ -1.89
HNF4AP41235 AC112653.1-201ENST00000443851 386 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 COX6CP12-201ENST00000446748 202 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.25□□□□□ -1.89
HNF4AP41235 PAXBP1P1-201ENST00000449315 447 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 RN7SL601P-201ENST00000471221 293 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 RPL21P129-201ENST00000491732 478 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.25□□□□□ -1.89
HNF4AP41235 RNU6-928P-201ENST00000516876 104 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 HMGN1P28-201ENST00000521340 364 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 AP003497.1-201ENST00000528472 562 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.25□□□□□ -1.89
HNF4AP41235 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.25□□□□□ -1.89
HNF4AP41235 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.25□□□□□ -1.89
HNF4AP41235 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.25□□□□□ -1.89
HNF4AP41235 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.25□□□□□ -1.89
HNF4AP41235 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.25□□□□□ -1.89
HNF4AP41235 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.25□□□□□ -1.89
HNF4AP41235 AC004852.3-201ENST00000614131 326 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AC013476.2-201ENST00000614456 459 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AL356321.1-201ENST00000621360 228 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AC009878.1-201ENST00000621819 340 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 AC110079.1-202ENST00000635213 138 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 PABPC1P9-201ENST00000426076 1612 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HNF4AP41235 AC022336.2-201ENST00000568966 2538 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HNF4AP41235 DDX10P1-201ENST00000448545 1933 ntBASIC3.25□□□□□ -1.89
HNF4AP41235 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HNF4AP41235 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
HNF4AP41235 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HNF4AP41235 AC008669.1-201ENST00000565823 2178 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
HNF4AP41235 RNU6-777P-201ENST00000364265 104 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
HNF4AP41235 MIR449B-201ENST00000384995 97 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 SNORA11-201ENST00000408789 128 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 RN7SKP142-201ENST00000411236 328 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.24□□□□□ -1.89
HNF4AP41235 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.24□□□□□ -1.89
HNF4AP41235 AL512649.1-201ENST00000428997 581 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 SAR1AP4-201ENST00000429225 591 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AL365184.2-201ENST00000431139 435 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 ARPC3P1-201ENST00000437218 533 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 RPL23AP22-201ENST00000437556 453 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 FTH1P1-201ENST00000437933 532 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AC108734.1-201ENST00000439549 399 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.24□□□□□ -1.89
HNF4AP41235 COX6CP2-201ENST00000444980 225 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 HMGN1P18-201ENST00000457642 277 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.24□□□□□ -1.89
HNF4AP41235 AC116337.2-201ENST00000477662 156 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AL135752.1-201ENST00000479477 471 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AC114967.1-201ENST00000504890 259 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 ARL4AP2-201ENST00000507378 601 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 APOOP4-201ENST00000513530 597 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AC068657.1-201ENST00000520807 306 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.24□□□□□ -1.89
HNF4AP41235 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.24□□□□□ -1.89
HNF4AP41235 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.24□□□□□ -1.89
HNF4AP41235 AL355836.1-201ENST00000555951 870 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.24□□□□□ -1.89
HNF4AP41235 AC034268.2-201ENST00000571784 482 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AC012213.3-201ENST00000577199 777 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.24□□□□□ -1.89
HNF4AP41235 AC015917.1-201ENST00000579654 510 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HNF4AP41235 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.24□□□□□ -1.89
HNF4AP41235 AC068790.2-201ENST00000602601 557 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AL136363.1-201ENST00000605349 337 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AC090186.1-201ENST00000605991 572 ntBASIC3.24□□□□□ -1.89
HNF4AP41235 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.24□□□□□ -1.89
HNF4AP41235 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.24□□□□□ -1.89
HNF4AP41235 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.24□□□□□ -1.89
HNF4AP41235 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HNF4AP41235 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.23□□□□□ -1.89
HNF4AP41235 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.23□□□□□ -1.89
HNF4AP41235 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HNF4AP41235 SNORA71.3-201ENST00000362582 128 ntBASIC3.23□□□□□ -1.89
HNF4AP41235 RNU6-744P-201ENST00000365557 107 ntBASIC3.23□□□□□ -1.89
HNF4AP41235 RNU6-741P-201ENST00000383889 107 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 154.8 ms