Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL356057.2-201ENST00000403318 432 ntBASIC1.98□□□□□ -2.09
CUX1P39880 SUB1P1-201ENST00000524415 382 ntBASIC1.98□□□□□ -2.09
CUX1P39880 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.98□□□□□ -2.09
CUX1P39880 GLYCAM1-201ENST00000546596 285 ntBASIC1.98□□□□□ -2.09
CUX1P39880 AC012640.5-201ENST00000623897 319 ntBASIC1.98□□□□□ -2.09
CUX1P39880 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.98□□□□□ -2.09
CUX1P39880 RBBP8P1-201ENST00000449447 1844 ntBASIC1.97□□□□□ -2.09
CUX1P39880 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CUX1P39880 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CUX1P39880 CD24P4-201ENST00000382840 243 ntBASIC1.97□□□□□ -2.09
CUX1P39880 RNU6-882P-201ENST00000391025 103 ntBASIC1.97□□□□□ -2.09
CUX1P39880 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.97□□□□□ -2.09
CUX1P39880 VN1R108P-201ENST00000431580 830 ntBASIC1.97□□□□□ -2.09
CUX1P39880 AL078601.1-201ENST00000444542 271 ntBASIC1.97□□□□□ -2.09
CUX1P39880 MTCO1P48-201ENST00000448024 1096 ntBASIC1.97□□□□□ -2.09
CUX1P39880 AL583843.1-201ENST00000456070 346 ntBASIC1.97□□□□□ -2.09
CUX1P39880 AC023050.1-201ENST00000498198 304 ntBASIC1.97□□□□□ -2.09
CUX1P39880 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CUX1P39880 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.97□□□□□ -2.09
CUX1P39880 GLUD1P4-201ENST00000590914 418 ntBASIC1.97□□□□□ -2.09
CUX1P39880 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC1.97□□□□□ -2.09
CUX1P39880 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
CUX1P39880 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CUX1P39880 AL354685.2-201ENST00000448218 1447 ntBASIC1.97□□□□□ -2.09
CUX1P39880 AL161722.3-201ENST00000605789 2983 ntBASIC1.97□□□□□ -2.09
CUX1P39880 AL359851.1-201ENST00000569460 4997 ntBASIC1.97□□□□□ -2.09
CUX1P39880 RNU4-91P-201ENST00000364778 135 ntBASIC1.96□□□□□ -2.09
CUX1P39880 AC234781.2-201ENST00000426370 994 ntBASIC1.96□□□□□ -2.09
CUX1P39880 SNRPFP3-201ENST00000457792 225 ntBASIC1.96□□□□□ -2.09
CUX1P39880 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.96□□□□□ -2.09
CUX1P39880 AC022493.1-201ENST00000492984 337 ntBASIC1.96□□□□□ -2.09
CUX1P39880 MTCYBP35-201ENST00000503630 1137 ntBASIC1.96□□□□□ -2.09
CUX1P39880 MTCO2P32-201ENST00000514865 403 ntBASIC1.96□□□□□ -2.09
CUX1P39880 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.96□□□□□ -2.09
CUX1P39880 AC087373.1-201ENST00000524920 491 ntBASIC1.96□□□□□ -2.09
CUX1P39880 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.96□□□□□ -2.09
CUX1P39880 ZNF734P-201ENST00000419494 1534 ntBASIC1.96□□□□□ -2.1
CUX1P39880 SNORA51.12-201ENST00000384448 134 ntBASIC1.96□□□□□ -2.1
CUX1P39880 MIR607-201ENST00000385241 96 ntBASIC1.96□□□□□ -2.1
CUX1P39880 U3.40-201ENST00000408706 208 ntBASIC1.96□□□□□ -2.1
CUX1P39880 AC092447.6-201ENST00000414578 210 ntBASIC1.96□□□□□ -2.1
CUX1P39880 NAP1L4P3-201ENST00000432820 1147 ntBASIC1.96□□□□□ -2.1
CUX1P39880 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CUX1P39880 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC1.96□□□□□ -2.1
CUX1P39880 RNA5SP436-201ENST00000516020 115 ntBASIC1.96□□□□□ -2.1
CUX1P39880 RNU1-104P-201ENST00000517280 175 ntBASIC1.96□□□□□ -2.1
CUX1P39880 AC019176.1-201ENST00000518519 225 ntBASIC1.96□□□□□ -2.1
CUX1P39880 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.96□□□□□ -2.1
CUX1P39880 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.96□□□□□ -2.1
CUX1P39880 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.96□□□□□ -2.1
CUX1P39880 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.96□□□□□ -2.1
CUX1P39880 AC135776.4-201ENST00000624300 1904 ntBASIC1.95□□□□□ -2.1
CUX1P39880 AL589994.1-201ENST00000404962 340 ntBASIC1.95□□□□□ -2.1
CUX1P39880 RNU2-71P-201ENST00000411395 189 ntBASIC1.95□□□□□ -2.1
CUX1P39880 PGBD4P3-201ENST00000440731 581 ntBASIC1.95□□□□□ -2.1
CUX1P39880 RPS26P56-201ENST00000444468 240 ntBASIC1.95□□□□□ -2.1
CUX1P39880 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.95□□□□□ -2.1
CUX1P39880 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.95□□□□□ -2.1
CUX1P39880 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CUX1P39880 AP003122.6-201ENST00000623831 495 ntBASIC1.95□□□□□ -2.1
CUX1P39880 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.95□□□□□ -2.1
CUX1P39880 AC138915.1-201ENST00000565427 1685 ntBASIC1.94□□□□□ -2.1
CUX1P39880 RNU6-600P-201ENST00000362524 99 ntBASIC1.94□□□□□ -2.1
CUX1P39880 RNU1-133P-201ENST00000364867 167 ntBASIC1.94□□□□□ -2.1
CUX1P39880 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CUX1P39880 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.94□□□□□ -2.1
CUX1P39880 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC1.94□□□□□ -2.1
CUX1P39880 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC1.94□□□□□ -2.1
CUX1P39880 DUXAP5-201ENST00000529668 529 ntBASIC1.94□□□□□ -2.1
CUX1P39880 MTCO1P40-201ENST00000574371 625 ntBASIC1.94□□□□□ -2.1
CUX1P39880 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC1.94□□□□□ -2.1
CUX1P39880 AC021755.4-201ENST00000616620 456 ntBASIC1.94□□□□□ -2.1
CUX1P39880 MIR203B-201ENST00000636080 86 ntBASIC1.94□□□□□ -2.1
CUX1P39880 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.94□□□□□ -2.1
CUX1P39880 CENPCP1-201ENST00000533085 2578 ntBASIC1.94□□□□□ -2.1
CUX1P39880 SNORA51.2-201ENST00000364595 132 ntBASIC1.93□□□□□ -2.1
CUX1P39880 MIR153-1-201ENST00000384914 90 ntBASIC1.93□□□□□ -2.1
CUX1P39880 CCNB2P1-201ENST00000399411 1150 ntBASIC1.93□□□□□ -2.1
CUX1P39880 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.93□□□□□ -2.1
CUX1P39880 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC1.93□□□□□ -2.1
CUX1P39880 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
CUX1P39880 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.93□□□□□ -2.1
CUX1P39880 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC1.93□□□□□ -2.1
CUX1P39880 AC087854.1-201ENST00000519706 414 ntBASIC1.93□□□□□ -2.1
CUX1P39880 AC009127.3-201ENST00000570531 403 ntBASIC1.93□□□□□ -2.1
CUX1P39880 AC090897.2-201ENST00000581715 130 ntBASIC1.93□□□□□ -2.1
CUX1P39880 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.93□□□□□ -2.1
CUX1P39880 AL161734.1-201ENST00000609720 557 ntBASIC1.93□□□□□ -2.1
CUX1P39880 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.93□□□□□ -2.1
CUX1P39880 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.93□□□□□ -2.1
CUX1P39880 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.93□□□□□ -2.1
CUX1P39880 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.93□□□□□ -2.1
CUX1P39880 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CUX1P39880 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC1.93□□□□□ -2.1
CUX1P39880 RNU6-225P-201ENST00000384613 103 ntBASIC1.92□□□□□ -2.1
CUX1P39880 RPL7P27-201ENST00000403775 720 ntBASIC1.92□□□□□ -2.1
CUX1P39880 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC1.92□□□□□ -2.1
CUX1P39880 RBM43P1-201ENST00000476891 1081 ntBASIC1.92□□□□□ -2.1
CUX1P39880 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC1.92□□□□□ -2.1
CUX1P39880 RNU1-61P-201ENST00000516107 151 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms