Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC018630.2-202ENST00000422992 927 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC1P18827 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC1P18827 AL831737.1-201ENST00000441288 271 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.7□□□□□ -1.98
SDC1P18827 NIPA2P5-201ENST00000452282 464 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AL590639.1-201ENST00000456484 337 ntBASIC2.7□□□□□ -1.98
SDC1P18827 ATG12P2-201ENST00000456830 416 ntBASIC2.7□□□□□ -1.98
SDC1P18827 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.7□□□□□ -1.98
SDC1P18827 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC1P18827 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.7□□□□□ -1.98
SDC1P18827 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC1P18827 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC1P18827 AP002404.1-201ENST00000532005 451 ntBASIC2.7□□□□□ -1.98
SDC1P18827 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC1P18827 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.7□□□□□ -1.98
SDC1P18827 MIR4307-201ENST00000582802 84 ntBASIC2.7□□□□□ -1.98
SDC1P18827 SRGNP1-201ENST00000603392 451 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AC013553.2-201ENST00000604244 589 ntBASIC2.7□□□□□ -1.98
SDC1P18827 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AC004223.4-201ENST00000612426 332 ntBASIC2.7□□□□□ -1.98
SDC1P18827 AC004696.1-201ENST00000614345 607 ntBASIC2.7□□□□□ -1.98
SDC1P18827 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2.7□□□□□ -1.98
SDC1P18827 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.7□□□□□ -1.98
SDC1P18827 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SDC1P18827 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC1P18827 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC1P18827 AC000403.1-201ENST00000613696 3585 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC092447.7-201ENST00000422212 1621 ntBASIC2.69□□□□□ -1.98
SDC1P18827 MAPK10-322ENST00000641485 4530 ntBASIC2.69□□□□□ -1.98
SDC1P18827 MIR422A-201ENST00000362286 90 ntBASIC2.69□□□□□ -1.98
SDC1P18827 MIR19A-201ENST00000384878 82 ntBASIC2.69□□□□□ -1.98
SDC1P18827 RNA5SP171-201ENST00000391071 115 ntBASIC2.69□□□□□ -1.98
SDC1P18827 SNORA48.5-201ENST00000391143 135 ntBASIC2.69□□□□□ -1.98
SDC1P18827 SNORA48.7-201ENST00000391302 135 ntBASIC2.69□□□□□ -1.98
SDC1P18827 CCNG1P1-201ENST00000406783 885 ntBASIC2.69□□□□□ -1.98
SDC1P18827 MIR1290-201ENST00000408735 78 ntBASIC2.69□□□□□ -1.98
SDC1P18827 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC1P18827 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC1P18827 NDUFB4P7-201ENST00000423198 363 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC008850.1-201ENST00000427546 362 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC092573.2-201ENST00000434546 243 ntBASIC2.69□□□□□ -1.98
SDC1P18827 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SDC1P18827 AL513043.1-201ENST00000439124 535 ntBASIC2.69□□□□□ -1.98
SDC1P18827 COX6CP2-201ENST00000444980 225 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC1P18827 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SDC1P18827 RPL36AP33-201ENST00000450395 310 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC1P18827 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC1P18827 AP1S2P1-201ENST00000457344 379 ntBASIC2.69□□□□□ -1.98
SDC1P18827 RPL7P49-201ENST00000471402 708 ntBASIC2.69□□□□□ -1.98
SDC1P18827 RPL23AP11-201ENST00000475260 469 ntBASIC2.69□□□□□ -1.98
SDC1P18827 RN7SL499P-201ENST00000481141 276 ntBASIC2.69□□□□□ -1.98
SDC1P18827 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SDC1P18827 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC1P18827 TTC39CP1-201ENST00000512513 755 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC1P18827 MRPS33P3-201ENST00000513456 322 ntBASIC2.69□□□□□ -1.98
SDC1P18827 GMPSP1-201ENST00000514075 579 ntBASIC2.69□□□□□ -1.98
SDC1P18827 SCGB1D5P-201ENST00000515134 247 ntBASIC2.69□□□□□ -1.98
SDC1P18827 SNORA9.3-201ENST00000516383 129 ntBASIC2.69□□□□□ -1.98
SDC1P18827 RNU6-711P-201ENST00000517255 106 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC1P18827 HPRT1P3-201ENST00000539521 576 ntBASIC2.69□□□□□ -1.98
SDC1P18827 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.69□□□□□ -1.98
SDC1P18827 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.69□□□□□ -1.98
SDC1P18827 H3F3AP1-201ENST00000559984 334 ntBASIC2.69□□□□□ -1.98
SDC1P18827 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC1P18827 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC1P18827 HSPE1P7-201ENST00000604681 321 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC018638.7-201ENST00000605836 1114 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC005046.1-201ENST00000608515 625 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AL360219.1-201ENST00000610230 366 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC1P18827 MIR6076-201ENST00000617521 113 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC1P18827 AL356266.1-201ENST00000623311 483 ntBASIC2.69□□□□□ -1.98
SDC1P18827 DDX10P1-201ENST00000448545 1933 ntBASIC2.69□□□□□ -1.98
SDC1P18827 SDAD1P2-201ENST00000441308 2028 ntBASIC2.69□□□□□ -1.98
SDC1P18827 AL138713.1-201ENST00000624026 2130 ntBASIC2.69□□□□□ -1.98
SDC1P18827 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SDC1P18827 RNU6-432P-201ENST00000384196 109 ntBASIC2.68□□□□□ -1.98
SDC1P18827 RNU6-851P-201ENST00000384565 107 ntBASIC2.68□□□□□ -1.98
SDC1P18827 U8.14-201ENST00000390843 143 ntBASIC2.68□□□□□ -1.98
SDC1P18827 RNU1-101P-201ENST00000391171 127 ntBASIC2.68□□□□□ -1.98
SDC1P18827 HSPE1P1-201ENST00000421494 318 ntBASIC2.68□□□□□ -1.98
SDC1P18827 TMEM167AP1-201ENST00000423409 219 ntBASIC2.68□□□□□ -1.98
SDC1P18827 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.68□□□□□ -1.98
SDC1P18827 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC1P18827 TAAR7P-201ENST00000436141 242 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.68□□□□□ -1.98
SDC1P18827 GDI2P2-201ENST00000445131 608 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AL590664.1-201ENST00000448065 339 ntBASIC2.68□□□□□ -1.98
SDC1P18827 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.68□□□□□ -1.98
SDC1P18827 RNU7-125P-201ENST00000458760 62 ntBASIC2.68□□□□□ -1.98
SDC1P18827 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.68□□□□□ -1.98
SDC1P18827 AC068587.2-201ENST00000478386 781 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms