| GLI3 | P10071 | ZNF209P-201 | ENST00000593450 | 2304 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | MDM2-203 | ENST00000299252 | 966 nt | TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | MDM2-207 | ENST00000360430 | 891 nt | TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU6-1181P-201 | ENST00000384191 | 106 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | EEF1E1-BLOC1S5-201 | ENST00000397456 | 768 nt | APPRIS P1 TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU2-25P-201 | ENST00000411041 | 191 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC092447.6-201 | ENST00000414578 | 210 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL513321.1-201 | ENST00000441175 | 761 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | HSFY3P-201 | ENST00000444242 | 1191 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | DPPA3P1-201 | ENST00000448050 | 469 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL139081.1-201 | ENST00000452207 | 382 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RPL21P134-201 | ENST00000453468 | 483 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC092925.1-201 | ENST00000470739 | 493 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | MTND3P6-201 | ENST00000485242 | 339 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | MTCO3P35-201 | ENST00000485582 | 781 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | ZBTB20-AS3-201 | ENST00000498630 | 464 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC034234.1-202 | ENST00000508696 | 339 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | C1DP5-201 | ENST00000525775 | 383 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC069228.1-202 | ENST00000550272 | 737 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | DISC1FP1-204 | ENST00000563681 | 466 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | MIR3935-201 | ENST00000583472 | 104 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC105094.2-203 | ENST00000590357 | 555 nt | TSL 4 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL133507.1-201 | ENST00000605269 | 557 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | KLRF1-207 | ENST00000617793 | 1096 nt | TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | STMN1P1-201 | ENST00000617809 | 440 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | MUC15-203 | ENST00000455601 | 3156 nt | APPRIS P1 TSL 2 BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | NEBL-202 | ENST00000377122 | 9216 nt | TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU4-51P-201 | ENST00000364206 | 140 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | BX248415.1-201 | ENST00000367421 | 1043 nt | APPRIS P1 TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL035407.2-201 | ENST00000454090 | 378 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | VPS26A-206 | ENST00000489794 | 928 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC108156.1-201 | ENST00000507849 | 481 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | LINC02364-201 | ENST00000514802 | 687 nt | TSL 2 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | MTCYBP41-201 | ENST00000528913 | 1123 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC027104.1-201 | ENST00000563702 | 681 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | PWRN3-201 | ENST00000566797 | 849 nt | TSL 5 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC242628.1-201 | ENST00000606810 | 391 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC009032.1-201 | ENST00000617574 | 431 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | U73479.1-201 | ENST00000618062 | 168 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | NEB-203 | ENST00000397345 | 26202 nt | APPRIS ALT2 TSL 5 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | NEB-209 | ENST00000427231 | 26202 nt | APPRIS ALT2 TSL 5 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | CYSLTR1-201 | ENST00000373304 | 2576 nt | APPRIS P1 TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU1-22P-201 | ENST00000363334 | 158 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | ZNF736P10Y-201 | ENST00000403990 | 1110 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNA5SP489-201 | ENST00000410986 | 109 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | SRIP3-201 | ENST00000413200 | 219 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL391839.1-201 | ENST00000417447 | 265 nt | TSL 2 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL136369.2-201 | ENST00000420825 | 537 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | TRAPPC2P4-201 | ENST00000421750 | 331 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | LINC02529-201 | ENST00000429657 | 772 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL589963.1-201 | ENST00000449282 | 727 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL606519.1-201 | ENST00000458146 | 580 nt | TSL 2 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC026347.1-201 | ENST00000463255 | 474 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | MND1-203 | ENST00000504860 | 638 nt | TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AF131216.2-201 | ENST00000512316 | 564 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU6-760P-201 | ENST00000516078 | 97 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC087373.1-201 | ENST00000524920 | 491 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | LINC02490-201 | ENST00000559915 | 601 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC023824.4-201 | ENST00000562572 | 476 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC106791.2-201 | ENST00000604680 | 391 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC008962.1-201 | ENST00000605729 | 304 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL161734.1-201 | ENST00000609720 | 557 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | DUXAP9-208 | ENST00000622815 | 614 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| GLI3 | P10071 | ZDBF2-202 | ENST00000611847 | 9890 nt | TSL 5 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | ZNF734P-201 | ENST00000419494 | 1534 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | OR2B2-201 | ENST00000303324 | 1212 nt | APPRIS P1 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU6-1293P-201 | ENST00000384077 | 107 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | SNORA67.6-201 | ENST00000391093 | 99 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL138775.1-201 | ENST00000429539 | 575 nt | TSL 1 (best) BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | LINC01967-202 | ENST00000437506 | 515 nt | TSL 5 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC064871.1-201 | ENST00000444562 | 427 nt | TSL 3 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AGBL4-IT1-201 | ENST00000457061 | 514 nt | TSL 3 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | HMGB1P38-201 | ENST00000490557 | 577 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | LINC02428-201 | ENST00000508099 | 527 nt | TSL 5 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU6-1223P-201 | ENST00000517124 | 104 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | IGHVII-53-1-201 | ENST00000519538 | 255 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | HMGB1P46-201 | ENST00000520062 | 610 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC022360.2-201 | ENST00000522390 | 456 nt | TSL 3 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AP003110.1-201 | ENST00000526976 | 717 nt | TSL 1 (best) BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | NBEAP1-201 | ENST00000554452 | 979 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL731537.2-201 | ENST00000561565 | 951 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC009107.1-201 | ENST00000561923 | 330 nt | TSL 3 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC090912.2-203 | ENST00000581177 | 477 nt | TSL 3 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC008687.2-201 | ENST00000597865 | 520 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC018618.2-201 | ENST00000604770 | 446 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU6-156P-201 | ENST00000621869 | 107 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | ZNF85-203 | ENST00000345030 | 1689 nt | APPRIS ALT2 TSL 5 BASIC | 2.05 | □□□□□ -2.08 | | |
| GLI3 | P10071 | PABPC1P7-201 | ENST00000413177 | 1513 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | TMEM68-218 | ENST00000617782 | 2477 nt | APPRIS P1 TSL 5 BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | SCN7A-206 | ENST00000619410 | 7186 nt | APPRIS P1 TSL 5 BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | SCN7A-207 | ENST00000621965 | 7186 nt | APPRIS P1 TSL 5 BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RNU6-1243P-201 | ENST00000364028 | 107 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL356057.2-201 | ENST00000403318 | 432 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | PRRC2CP1-201 | ENST00000404428 | 159 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AL354733.1-204 | ENST00000412069 | 424 nt | TSL 5 BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | UBE2V2P3-201 | ENST00000433562 | 437 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | LINC00440-201 | ENST00000446579 | 734 nt | TSL 5 BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | AC093110.1-201 | ENST00000456363 | 602 nt | TSL 2 BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | SYPL1P1-201 | ENST00000473622 | 768 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| GLI3 | P10071 | RPS29P20-201 | ENST00000489592 | 171 nt | BASIC | 2.04 | □□□□□ -2.08 | | |