Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SIX3O95343 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.15□□□□□ -1.91
SIX3O95343 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
SIX3O95343 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SIX3O95343 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.15□□□□□ -1.91
SIX3O95343 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX3O95343 MIR148B-201ENST00000362252 99 ntBASIC3.14□□□□□ -1.91
SIX3O95343 U3.11-201ENST00000364476 212 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.14□□□□□ -1.91
SIX3O95343 RNU6-198P-201ENST00000384258 104 ntBASIC3.14□□□□□ -1.91
SIX3O95343 RNU6-809P-201ENST00000384461 107 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AL513331.1-201ENST00000411908 397 ntBASIC3.14□□□□□ -1.91
SIX3O95343 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX3O95343 RPL23AP69-201ENST00000431134 458 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX3O95343 RPL37P21-201ENST00000435890 276 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AL606662.1-201ENST00000445763 553 ntBASIC3.14□□□□□ -1.91
SIX3O95343 CYCSP35-201ENST00000451978 304 ntBASIC3.14□□□□□ -1.91
SIX3O95343 MTCO1P42-201ENST00000457379 726 ntBASIC3.14□□□□□ -1.91
SIX3O95343 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.14□□□□□ -1.91
SIX3O95343 AC008155.2-201ENST00000464337 397 ntBASIC3.14□□□□□ -1.91
SIX3O95343 KC877373.1-201ENST00000479066 408 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AC055855.1-201ENST00000489563 579 ntBASIC3.14□□□□□ -1.91
SIX3O95343 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX3O95343 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX3O95343 AF131216.2-201ENST00000512316 564 ntBASIC3.14□□□□□ -1.91
SIX3O95343 PHBP14-201ENST00000512887 367 ntBASIC3.14□□□□□ -1.91
SIX3O95343 RNU6-1282P-201ENST00000516735 96 ntBASIC3.14□□□□□ -1.91
SIX3O95343 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.14□□□□□ -1.91
SIX3O95343 AC068657.1-201ENST00000520807 306 ntBASIC3.14□□□□□ -1.91
SIX3O95343 ATP5F1P5-201ENST00000526403 760 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX3O95343 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.14□□□□□ -1.91
SIX3O95343 HIGD1AP1-201ENST00000550979 275 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AC005951.1-201ENST00000576706 485 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.14□□□□□ -1.91
SIX3O95343 MIR4307-201ENST00000582802 84 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.14□□□□□ -1.91
SIX3O95343 AL355816.2-201ENST00000610049 647 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AL355365.1-201ENST00000616480 294 ntBASIC3.14□□□□□ -1.91
SIX3O95343 AC092192.1-201ENST00000633154 1018 ntBASIC3.14□□□□□ -1.91
SIX3O95343 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX3O95343 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SIX3O95343 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.14□□□□□ -1.91
SIX3O95343 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
SIX3O95343 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SIX3O95343 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SIX3O95343 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
SIX3O95343 OR56A5-201ENST00000340110 738 ntBASIC3.13□□□□□ -1.91
SIX3O95343 RNU6-799P-201ENST00000363567 107 ntBASIC3.13□□□□□ -1.91
SIX3O95343 RNA5SP50-201ENST00000363731 107 ntBASIC3.13□□□□□ -1.91
SIX3O95343 RNU6-1035P-201ENST00000384477 107 ntBASIC3.13□□□□□ -1.91
SIX3O95343 Z85995.1-201ENST00000415547 335 ntBASIC3.13□□□□□ -1.91
SIX3O95343 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX3O95343 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX3O95343 Z82210.1-201ENST00000440037 231 ntBASIC3.13□□□□□ -1.91
SIX3O95343 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX3O95343 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX3O95343 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX3O95343 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX3O95343 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX3O95343 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX3O95343 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.13□□□□□ -1.91
SIX3O95343 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX3O95343 MIR2682-201ENST00000580305 110 ntBASIC3.13□□□□□ -1.91
SIX3O95343 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.13□□□□□ -1.91
SIX3O95343 MTCYBP22-201ENST00000603788 447 ntBASIC3.13□□□□□ -1.91
SIX3O95343 BCRP9-201ENST00000605312 388 ntBASIC3.13□□□□□ -1.91
SIX3O95343 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX3O95343 AC004852.3-201ENST00000614131 326 ntBASIC3.13□□□□□ -1.91
SIX3O95343 AL157817.1-201ENST00000614264 790 ntBASIC3.13□□□□□ -1.91
SIX3O95343 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.13□□□□□ -1.91
SIX3O95343 AL355493.4-201ENST00000618530 292 ntBASIC3.13□□□□□ -1.91
SIX3O95343 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.13□□□□□ -1.91
SIX3O95343 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
SIX3O95343 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.12□□□□□ -1.91
SIX3O95343 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SIX3O95343 U3.6-201ENST00000363622 211 ntBASIC3.12□□□□□ -1.91
SIX3O95343 RNU6-501P-201ENST00000364072 100 ntBASIC3.12□□□□□ -1.91
SIX3O95343 RNU5A-8P-201ENST00000364102 114 ntBASIC3.12□□□□□ -1.91
SIX3O95343 SNORA48.5-201ENST00000391143 135 ntBASIC3.12□□□□□ -1.91
SIX3O95343 UBA52P6-201ENST00000399822 382 ntBASIC3.12□□□□□ -1.91
SIX3O95343 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SIX3O95343 RPL32P35-201ENST00000415214 394 ntBASIC3.12□□□□□ -1.91
SIX3O95343 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.12□□□□□ -1.91
SIX3O95343 AC005005.2-201ENST00000420779 380 ntBASIC3.12□□□□□ -1.91
SIX3O95343 AL451054.2-201ENST00000420896 202 ntBASIC3.12□□□□□ -1.91
SIX3O95343 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX3O95343 MTND4P20-201ENST00000424125 869 ntBASIC3.12□□□□□ -1.91
SIX3O95343 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SIX3O95343 LARP1BP3-201ENST00000437229 869 ntBASIC3.12□□□□□ -1.91
SIX3O95343 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.12□□□□□ -1.91
SIX3O95343 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX3O95343 RPS29P12-201ENST00000460178 152 ntBASIC3.12□□□□□ -1.91
SIX3O95343 AC010631.1-201ENST00000474150 156 ntBASIC3.12□□□□□ -1.91
SIX3O95343 AC068587.2-201ENST00000478386 781 ntBASIC3.12□□□□□ -1.91
SIX3O95343 RPS3AP14-201ENST00000483907 780 ntBASIC3.12□□□□□ -1.91
SIX3O95343 LARP1BP2-201ENST00000486594 519 ntBASIC3.12□□□□□ -1.91
SIX3O95343 OR2A20P-203ENST00000498397 1268 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms