Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
CLDN3O15551 RNU6-1316P-201ENST00000384242 108 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 MIR767-201ENST00000390228 109 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 RNU6-516P-201ENST00000411381 104 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 VN1R51P-201ENST00000411675 945 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 AL513477.1-202ENST00000417061 214 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 OR10R1P-201ENST00000441524 1141 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 AC009296.1-201ENST00000443146 155 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.88□□□□□ -1.95
CLDN3O15551 CBWD4P-201ENST00000445695 655 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 BMI1P1-201ENST00000445879 941 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CLDN3O15551 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.88□□□□□ -1.95
CLDN3O15551 FCF1P6-201ENST00000456841 595 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 RPS20P20-201ENST00000460498 340 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.88□□□□□ -1.95
CLDN3O15551 HMGN1P28-201ENST00000521340 364 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.88□□□□□ -1.95
CLDN3O15551 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.88□□□□□ -1.95
CLDN3O15551 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.88□□□□□ -1.95
CLDN3O15551 HSPE1P20-201ENST00000538133 289 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.88□□□□□ -1.95
CLDN3O15551 AC010620.2-201ENST00000600135 313 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 AC006023.1-201ENST00000603944 259 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CLDN3O15551 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 AC009268.2-201ENST00000621925 457 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.88□□□□□ -1.95
CLDN3O15551 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.88□□□□□ -1.95
CLDN3O15551 AC099654.9-201ENST00000637055 678 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.88□□□□□ -1.95
CLDN3O15551 AC011477.1-204ENST00000623416 1325 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.88□□□□□ -1.95
CLDN3O15551 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CLDN3O15551 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CLDN3O15551 RNU1-39P-201ENST00000383897 165 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 RNU6-1176P-201ENST00000390955 107 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CLDN3O15551 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.87□□□□□ -1.95
CLDN3O15551 RPLP0P7-201ENST00000416050 667 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 MTCYBP38-201ENST00000417160 1123 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.87□□□□□ -1.95
CLDN3O15551 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.87□□□□□ -1.95
CLDN3O15551 AL031313.1-201ENST00000448435 256 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 MTND1P9-201ENST00000453775 944 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 ZNF736P4Y-201ENST00000454995 1243 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.87□□□□□ -1.95
CLDN3O15551 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.87□□□□□ -1.95
CLDN3O15551 MTND2P7-201ENST00000521337 640 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 MTCO1P47-201ENST00000523889 1271 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.87□□□□□ -1.95
CLDN3O15551 MIR4509-3-201ENST00000578671 94 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 MIR3162-201ENST00000581818 82 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 MIR4509-2-201ENST00000583920 94 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.87□□□□□ -1.95
CLDN3O15551 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.87□□□□□ -1.95
CLDN3O15551 AL357094.1-201ENST00000603845 844 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 AL136363.1-201ENST00000605349 337 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 RPL23AP88-201ENST00000605759 454 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 MIR4509-1-201ENST00000618224 94 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 AC019226.1-201ENST00000625666 515 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 AL445984.1-201ENST00000637834 659 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
CLDN3O15551 AC008669.1-201ENST00000565823 2178 ntBASIC2.87□□□□□ -1.95
CLDN3O15551 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.87□□□□□ -1.95
CLDN3O15551 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CLDN3O15551 AC092447.10-201ENST00000620607 1652 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLDN3O15551 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLDN3O15551 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLDN3O15551 SNORD56.5-201ENST00000364281 72 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 RNU4-68P-201ENST00000364314 141 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CLDN3O15551 RNU6-741P-201ENST00000383889 107 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.86□□□□□ -1.95
CLDN3O15551 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.86□□□□□ -1.95
CLDN3O15551 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.86□□□□□ -1.95
CLDN3O15551 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AC009414.1-201ENST00000427200 443 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.86□□□□□ -1.95
CLDN3O15551 UBE2V1P13-201ENST00000436983 439 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.86□□□□□ -1.95
CLDN3O15551 PIGFP3-201ENST00000441918 722 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 EEF1E1P1-201ENST00000446998 430 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.86□□□□□ -1.95
CLDN3O15551 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.86□□□□□ -1.95
CLDN3O15551 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.86□□□□□ -1.95
CLDN3O15551 RNA5SP282-201ENST00000516355 108 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 RNA5SP291-201ENST00000517222 105 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 ELOCP31-201ENST00000540463 467 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.86□□□□□ -1.95
CLDN3O15551 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.86□□□□□ -1.95
CLDN3O15551 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.86□□□□□ -1.95
CLDN3O15551 RPL12P50-201ENST00000603116 116 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AL139344.1-201ENST00000605228 195 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AC090186.1-201ENST00000605991 572 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AL157392.4-201ENST00000609756 345 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 AC013476.2-201ENST00000614456 459 ntBASIC2.86□□□□□ -1.95
CLDN3O15551 UCA1.1-201ENST00000620952 75 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms