Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RPS12P10-201ENST00000427031 377 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RPL21P126-201ENST00000470049 478 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RPS27AP1-201ENST00000475545 471 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 AC104564.1-201ENST00000493028 407 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 AC022493.2-201ENST00000506122 481 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RNU2-69P-201ENST00000516061 100 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 IGLVIV-65-201ENST00000517313 360 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-323P-201ENST00000521915 107 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 MIR4284-201ENST00000578924 81 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 AC015914.2-201ENST00000618167 288 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 AL391684.1-202ENST00000641293 1636 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 ZFRP1-201ENST00000457579 2970 ntBASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CHMP3Q9Y3E7 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC010329.2-201ENST00000595195 2737 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-490P-201ENST00000362985 107 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-715P-201ENST00000365204 103 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-701P-201ENST00000384059 107 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-95P-201ENST00000384697 107 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 MIR659-201ENST00000384963 97 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-754P-201ENST00000391166 107 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AL139039.1-201ENST00000401900 692 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AL080315.1-201ENST00000406055 466 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RPL7P10-201ENST00000417407 739 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RPL7AP25-201ENST00000423357 805 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 CALM2P2-201ENST00000428512 440 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RPL23AP93-201ENST00000440847 484 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RNU7-167P-201ENST00000459160 62 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC087385.1-201ENST00000475062 312 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC005798.1-201ENST00000513715 387 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 Y_RNA.668-201ENST00000516233 93 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC084783.1-201ENST00000565846 910 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC005357.1-201ENST00000588399 301 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC092447.9-201ENST00000603395 144 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AL138889.2-201ENST00000603883 242 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC006329.2-201ENST00000611491 394 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 AC107871.2-201ENST00000612894 502 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 U2.1-201ENST00000618978 145 ntBASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.75□□□□□ -1.49
CHMP3Q9Y3E7 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 RAD17P1-201ENST00000418130 2042 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-1059P-201ENST00000363752 98 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 Y_RNA.399-201ENST00000383955 105 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 RNU6-393P-201ENST00000384475 107 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 RPL31P2-201ENST00000413849 377 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 AC243428.1-201ENST00000421099 264 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 USP9YP30-201ENST00000430729 455 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 MRPS18BP2-201ENST00000434310 759 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 PCNPP5-201ENST00000452246 481 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 SUMO1P2-201ENST00000452524 304 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 SNORD116.3-201ENST00000517176 78 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 Y_RNA.721-201ENST00000517207 102 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 AC023442.1-201ENST00000531247 422 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 AC007566.2-201ENST00000603642 413 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 AP005019.3-201ENST00000620418 560 ntBASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 MPP6-209ENST00000625307 126 ntTSL 5 BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CHMP3Q9Y3E7 AC025031.4-201ENST00000621248 3271 ntBASIC5.73□□□□□ -1.49
CHMP3Q9Y3E7 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.73□□□□□ -1.49
CHMP3Q9Y3E7 AP000756.2-201ENST00000624168 2567 ntBASIC5.73□□□□□ -1.49
CHMP3Q9Y3E7 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CHMP3Q9Y3E7 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP3Q9Y3E7 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP3Q9Y3E7 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CHMP3Q9Y3E7 LINC01355-201ENST00000566551 5444 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms