Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC138915.3-201ENST00000562908 1389 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 RNU1-64P-201ENST00000365443 163 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AL445189.1-201ENST00000405722 338 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 HMGN1P14-201ENST00000412459 517 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC007899.1-201ENST00000412776 775 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 MTND2P24-201ENST00000453434 806 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 RNU6-64P-201ENST00000517119 105 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AP003467.2-201ENST00000520175 319 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AP003122.4-201ENST00000530980 758 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC123904.3-201ENST00000547218 814 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 RPL21P5-201ENST00000554662 472 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AL355836.1-201ENST00000555951 870 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC009977.1-201ENST00000586015 570 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AL020997.2-201ENST00000602607 184 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 BX664608.1-201ENST00000610519 487 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 uc_338.12-201ENST00000616344 181 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AL603839.4-201ENST00000624658 1005 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AL392088.2-201ENST00000637607 285 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 ZNF826P-207ENST00000622273 1910 ntBASIC3.54□□□□□ -1.84
LIMA1Q9UHB6 AC092104.1-201ENST00000497346 1441 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC091152.2-201ENST00000591628 2569 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 RNA5SP295-201ENST00000362655 121 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 RNY4P16-201ENST00000364768 94 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 EI24P2-201ENST00000397776 1076 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 RN7SKP202-201ENST00000410439 330 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 ELOCP17-201ENST00000414751 326 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 BX842559.1-201ENST00000419615 532 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 SEPT2P1-201ENST00000419651 180 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 NDUFB4P7-201ENST00000423198 363 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AL356867.1-201ENST00000429623 299 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 NDUFB4P6-201ENST00000436819 366 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 MTCO2P16-201ENST00000436962 677 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 PDSS1P2-201ENST00000449397 678 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 SSXP4-201ENST00000451349 245 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 SSXP1-201ENST00000453640 473 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AL359385.1-201ENST00000456509 365 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 CDC42P4-201ENST00000510507 563 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 MTCO3P28-201ENST00000513351 515 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 SCARNA15.2-201ENST00000516409 127 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AP003181.2-201ENST00000528941 181 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC135279.1-201ENST00000543493 504 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 RPL23AP84-201ENST00000571193 464 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 MIR2682-201ENST00000580305 110 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 MIR3118-1-201ENST00000581787 76 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 MIR3922-201ENST00000585192 84 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 HMGN1P30-201ENST00000589286 268 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 RNU6-87P-201ENST00000607561 108 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AL157817.1-201ENST00000614264 790 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC013476.2-201ENST00000614456 459 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 SDR42E1P2-201ENST00000614861 481 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC010133.1-201ENST00000615809 842 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC090132.2-201ENST00000615881 347 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC009090.3-201ENST00000616553 565 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC108479.2-201ENST00000617314 601 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 XIST_intron.1-201ENST00000619444 68 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 AC068137.4-201ENST00000638485 296 ntBASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LIMA1Q9UHB6 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.53□□□□□ -1.85
LIMA1Q9UHB6 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LIMA1Q9UHB6 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.52□□□□□ -1.85
LIMA1Q9UHB6 AC093831.2-201ENST00000624393 3427 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms