Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 AC091812.1-201ENST00000432235 1948 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 MTND5P7-201ENST00000413558 1798 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 DDX18P3-201ENST00000404856 2007 ntBASIC5.18□□□□□ -1.58
CCDC39Q9UFE4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AC010615.1-201ENST00000594254 1764 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 MAPK10-304ENST00000641341 3984 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 RNU1-115P-201ENST00000365329 160 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 RNU4-25P-201ENST00000410569 230 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 EIF4A1P3-201ENST00000411521 244 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 COX6CP15-201ENST00000426313 211 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AC010881.1-201ENST00000433830 235 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 RPL7P28-201ENST00000437739 740 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AC093156.1-201ENST00000440382 670 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 SNRPFP3-201ENST00000457792 225 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 SNORD127-201ENST00000458892 86 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 RPL23AP2-201ENST00000471227 466 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 PARP4P3-201ENST00000510265 317 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 RNU6-138P-201ENST00000515952 107 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 RNU6-1023P-201ENST00000516137 106 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 IGKV1-32-201ENST00000519290 311 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AC131281.1-201ENST00000522984 164 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 MIR5583-1-201ENST00000580941 59 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AC125232.2-201ENST00000592457 143 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AC078899.3-201ENST00000599065 212 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 uc_338.12-201ENST00000616344 181 ntBASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
CCDC39Q9UFE4 AC233263.6-201ENST00000631132 1963 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RNU6-490P-201ENST00000362985 107 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RNU6-774P-201ENST00000363238 107 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 Y_RNA.152-201ENST00000363578 100 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RNA5SP513-201ENST00000364648 118 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 MIR558-201ENST00000384920 94 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 MIR550A3-201ENST00000390735 95 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RPL23AP25-201ENST00000430973 463 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 YWHAZP8-201ENST00000436935 731 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AL590664.1-201ENST00000448065 339 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AC055855.1-201ENST00000489563 579 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RPL23AP72-201ENST00000492447 435 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RPL30P11-201ENST00000495304 339 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 VWA8P1-201ENST00000510889 176 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AC007016.1-201ENST00000512110 244 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RNU6-470P-201ENST00000515954 104 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 RNU6-1016P-201ENST00000516689 94 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AL021879.1-201ENST00000611756 288 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 PISRT1.1-201ENST00000616930 107 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AC010378.1-201ENST00000619270 362 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AC091905.2-201ENST00000623143 306 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AC125257.1-201ENST00000560400 2930 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 AC018529.3-201ENST00000624212 2254 ntBASIC5.16□□□□□ -1.58
CCDC39Q9UFE4 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC39Q9UFE4 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC39Q9UFE4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC39Q9UFE4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC39Q9UFE4 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC39Q9UFE4 Y_RNA.210-201ENST00000364161 110 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 SNORA20.1-201ENST00000364790 130 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.380-201ENST00000365663 111 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.404-201ENST00000383978 102 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 RNA5SP87-201ENST00000384155 118 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.461-201ENST00000384263 103 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.485-201ENST00000384395 102 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 RNU6-713P-201ENST00000384761 107 ntBASIC5.15□□□□□ -1.59
CCDC39Q9UFE4 SDHCP2-201ENST00000398565 501 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms