Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 BNIP3P23-201ENST00000599655 511 ntBASIC2.88□□□□□ -1.95
LHX3Q9UBR4 AC093424.1-201ENST00000604999 338 ntBASIC2.88□□□□□ -1.95
LHX3Q9UBR4 AC099778.2-201ENST00000610904 211 ntBASIC2.88□□□□□ -1.95
LHX3Q9UBR4 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.88□□□□□ -1.95
LHX3Q9UBR4 AL158801.5-201ENST00000623123 465 ntBASIC2.88□□□□□ -1.95
LHX3Q9UBR4 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.88□□□□□ -1.95
LHX3Q9UBR4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.88□□□□□ -1.95
LHX3Q9UBR4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 Y_RNA.18-201ENST00000362461 102 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 RNU6-223P-201ENST00000362830 107 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 SNORA80A-201ENST00000363922 136 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 MIR512-1-201ENST00000384913 84 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 SNORA48.8-201ENST00000391324 134 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AL359704.1-201ENST00000411586 781 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AL592148.1-201ENST00000413568 445 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AL645937.1-202ENST00000421799 937 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 COTL1P1-201ENST00000422309 375 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC010099.3-201ENST00000423896 409 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 FAM103A2P-201ENST00000444122 354 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC096576.1-201ENST00000489014 359 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 RNU6-1256P-201ENST00000516539 103 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 RN7SKP287-201ENST00000516546 266 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC087276.1-201ENST00000529659 480 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC079600.2-201ENST00000550076 130 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AL355836.1-201ENST00000555951 870 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 OR4H12P-201ENST00000556269 907 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 MIR544B-201ENST00000582372 78 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC021171.1-201ENST00000603137 706 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AL137843.1-201ENST00000605078 385 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC013476.2-201ENST00000614456 459 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AL355493.4-201ENST00000618530 292 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AL138713.1-201ENST00000624026 2130 ntBASIC2.87□□□□□ -1.95
LHX3Q9UBR4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
LHX3Q9UBR4 AC110774.1-201ENST00000623567 2018 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL391994.1-201ENST00000254724 282 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 RNA5SP252-201ENST00000391131 119 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL451074.5-201ENST00000415894 435 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL445669.1-201ENST00000426743 755 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 MTND1P20-201ENST00000430341 950 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 RPS20P5-201ENST00000434808 360 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 ATG12P2-201ENST00000456830 416 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AP1S2P1-201ENST00000457344 379 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL031183.1-201ENST00000457667 207 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 RPS20P20-201ENST00000460498 340 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC104472.2-201ENST00000469035 601 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 MTND4LP22-201ENST00000508209 276 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC091826.1-201ENST00000514065 313 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AP004247.1-201ENST00000531556 1289 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC013828.2-201ENST00000532487 235 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 OR4T1P-201ENST00000554933 911 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL845331.3-202ENST00000562856 261 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 ACTR3BP3-201ENST00000565577 979 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC079089.3-201ENST00000603094 673 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC013553.2-201ENST00000604244 589 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL139344.1-201ENST00000605228 195 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AL020991.1-201ENST00000612314 373 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC093838.1-201ENST00000613014 469 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC021755.4-201ENST00000616620 456 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AP000676.3-201ENST00000623299 569 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC008993.2-201ENST00000631744 806 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC233263.6-201ENST00000631132 1963 ntBASIC2.86□□□□□ -1.95
LHX3Q9UBR4 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.86□□□□□ -1.95
LHX3Q9UBR4 MTND5P33-201ENST00000571250 1450 ntBASIC2.85□□□□□ -1.95
LHX3Q9UBR4 AC092593.1-201ENST00000515413 1815 ntBASIC2.85□□□□□ -1.95
LHX3Q9UBR4 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
LHX3Q9UBR4 Y_RNA.302-201ENST00000364997 102 ntBASIC2.85□□□□□ -1.95
LHX3Q9UBR4 AL122016.1-201ENST00000403365 367 ntBASIC2.85□□□□□ -1.95
LHX3Q9UBR4 HMGB1P11-201ENST00000413899 637 ntBASIC2.85□□□□□ -1.95
LHX3Q9UBR4 RPS29P6-201ENST00000438196 145 ntBASIC2.85□□□□□ -1.95
LHX3Q9UBR4 AL831737.1-201ENST00000441288 271 ntBASIC2.85□□□□□ -1.95
LHX3Q9UBR4 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms