Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MRPL42P6-201ENST00000486397 371 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 CKS1BP2-201ENST00000497342 240 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 MIR4504-201ENST00000577413 92 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 MIR3935-201ENST00000583472 104 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 HSPE1P7-201ENST00000604681 321 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC016727.1-205ENST00000605437 569 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC092608.3-201ENST00000625017 386 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AL109809.4-201ENST00000603520 2185 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 RNA5SP27-201ENST00000363839 119 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 SNORD51-201ENST00000384320 80 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 RNA5SP354-201ENST00000391247 136 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 SNORD23.1-201ENST00000408212 104 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 UBE2V1P11-201ENST00000411559 285 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 RPS15AP38-201ENST00000413110 372 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 TRIM60P5Y-201ENST00000413946 574 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 EZH2P1-201ENST00000431167 291 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 RPL23AP16-201ENST00000441715 421 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AL121871.1-201ENST00000443413 436 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC078857.1-201ENST00000469870 667 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 VPS26AP1-201ENST00000483197 979 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 RPL23AP41-201ENST00000484754 458 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 RPPH1-2P-201ENST00000516688 293 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 CR383656.7-201ENST00000548164 174 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC004217.3-201ENST00000551552 878 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AL138976.2-201ENST00000563989 694 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 STMN1P1-201ENST00000617809 440 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 MFSD8-245ENST00000641743 948 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 OR5H6-203ENST00000642105 978 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 AL513185.3-201ENST00000433335 1300 ntBASIC1.62□□□□□ -2.15
SCN3AQ9NY46 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.62□□□□□ -2.15
SCN3AQ9NY46 UBE2L2-201ENST00000254302 429 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 MIR17-201ENST00000385012 84 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 RNU4-78P-201ENST00000410940 126 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AL035410.1-201ENST00000427409 427 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AL592045.1-201ENST00000429867 352 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 HMGN3P1-201ENST00000453847 193 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC006390.1-201ENST00000508068 283 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 BTF3P12-201ENST00000519620 469 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC016542.1-201ENST00000608259 493 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AL449363.1-201ENST00000617815 186 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC027309.3-201ENST00000623419 351 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 ZNF72P-201ENST00000425869 1908 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC022336.2-201ENST00000568966 2538 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 RNA5SP258-201ENST00000362750 119 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 RNU6-198P-201ENST00000384258 104 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 SNORA67.5-201ENST00000391036 107 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 RNU6-272P-201ENST00000411028 104 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 RNA5SP247-201ENST00000411181 105 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC018630.2-202ENST00000422992 927 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 UBE2V2P3-201ENST00000433562 437 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 ARF4P4-201ENST00000439608 520 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 HGF-207ENST00000453018 721 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 SNORA70.16-201ENST00000516390 95 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 CBX3P4-201ENST00000538909 354 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 TRAV28-201ENST00000557548 323 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 MIR4255-201ENST00000579351 72 ntBASIC1.61□□□□□ -2.15
SCN3AQ9NY46 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.61□□□□□ -2.15
SCN3AQ9NY46 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms