Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC147055.4-201ENST00000504399 745 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 snoZ278.1-201ENST00000517059 112 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.5□□□□□ -2.01
USP42Q9H9J4 MIR4781-201ENST00000585250 76 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AC019159.1-201ENST00000605094 187 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AL136363.1-201ENST00000605349 337 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AC012443.1-201ENST00000605605 231 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.5□□□□□ -2.01
USP42Q9H9J4 AC140725.3-201ENST00000616193 880 ntBASIC2.5□□□□□ -2.01
USP42Q9H9J4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP42Q9H9J4 RNA5SP160-201ENST00000364866 120 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 RNA5SP37-201ENST00000365420 130 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 RNA5SP354-201ENST00000391247 136 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AL136372.1-201ENST00000403060 228 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC246680.2-201ENST00000422106 389 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC003989.2-201ENST00000440224 169 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 RAC1P7-201ENST00000445367 377 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC073901.1-201ENST00000462471 408 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AP000852.1-201ENST00000472460 573 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 RPS15AP34-201ENST00000487776 387 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 GTF2IP9-201ENST00000502460 301 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC011260.1-201ENST00000578420 472 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC027309.3-201ENST00000623419 351 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC244517.12-201ENST00000623581 663 ntBASIC2.49□□□□□ -2.01
USP42Q9H9J4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.49□□□□□ -2.01
USP42Q9H9J4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
USP42Q9H9J4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
USP42Q9H9J4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
USP42Q9H9J4 RNU6-115P-201ENST00000364310 107 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 RNA5SP338-201ENST00000410495 85 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 RNU2-15P-201ENST00000410692 191 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 AC008173.1-201ENST00000418901 264 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 AL445685.2-201ENST00000422551 342 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 ARPC3P1-201ENST00000437218 533 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 HSFY3P-201ENST00000444242 1191 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 RNU6-717P-201ENST00000459076 104 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 snoU13.28-201ENST00000459235 104 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 NAMPTP2-201ENST00000505629 1115 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 RN7SKP31-201ENST00000516354 278 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 AC091834.1-201ENST00000614543 472 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.48□□□□□ -2.01
USP42Q9H9J4 AP000553.5-201ENST00000641933 54 ntBASIC2.48□□□□□ -2.01
USP42Q9H9J4 RNU6-457P-201ENST00000363999 107 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP42Q9H9J4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP42Q9H9J4 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 VN1R42P-201ENST00000424651 344 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 RPL7L1P10-201ENST00000427790 463 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 AC027124.2-201ENST00000428249 105 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP42Q9H9J4 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 AC092798.1-201ENST00000458542 409 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 snoU109.4-201ENST00000458953 143 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 SNORD13-201ENST00000459299 104 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 MTCO1P47-201ENST00000523889 1271 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 MIR5089-201ENST00000580047 84 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 MIR3683-201ENST00000580847 82 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 VN1R80P-201ENST00000597126 338 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 AC079791.1-201ENST00000605356 973 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 AC011890.2-201ENST00000613393 294 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 MIR7111-201ENST00000619751 72 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 AC079597.1-201ENST00000624306 508 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 SGO1P1-201ENST00000603525 1447 ntBASIC2.47□□□□□ -2.01
USP42Q9H9J4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP42Q9H9J4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP42Q9H9J4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
USP42Q9H9J4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.01
USP42Q9H9J4 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
USP42Q9H9J4 RNU6-198P-201ENST00000384258 104 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.46□□□□□ -2.02
USP42Q9H9J4 Z82205.1-201ENST00000428456 297 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 RNFT1P2-201ENST00000443064 757 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.46□□□□□ -2.02
USP42Q9H9J4 RNU6-775P-201ENST00000459318 96 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms