Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU5F-6P-201ENST00000362979 116 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 Y_RNA.201-201ENST00000364052 96 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AC083875.1-201ENST00000419509 405 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.27□□□□□ -1.89
USP28Q96RU2 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 MTCYBP45-201ENST00000435243 565 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AL353706.1-201ENST00000436728 494 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.27□□□□□ -1.89
USP28Q96RU2 MTCO1P19-201ENST00000443487 500 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC002381.1-201ENST00000447049 280 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AL358232.1-201ENST00000448030 501 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 MTCO1P27-201ENST00000448269 226 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC140076.1-201ENST00000449897 361 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AL445669.2-201ENST00000454425 421 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC003982.1-202ENST00000469928 248 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC108860.1-201ENST00000484521 383 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.27□□□□□ -1.89
USP28Q96RU2 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.27□□□□□ -1.89
USP28Q96RU2 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AC022690.1-201ENST00000526681 550 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AC013828.2-201ENST00000532487 235 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.27□□□□□ -1.89
USP28Q96RU2 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AL391156.1-201ENST00000554965 554 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC087481.2-201ENST00000565492 330 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 MTCO3P24-201ENST00000572729 782 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.27□□□□□ -1.89
USP28Q96RU2 COX6CP3-201ENST00000580869 223 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AP001004.1-201ENST00000582468 324 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.27□□□□□ -1.89
USP28Q96RU2 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.27□□□□□ -1.89
USP28Q96RU2 RNU6-88P-201ENST00000606801 100 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC097468.3-201ENST00000607956 456 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC004832.5-201ENST00000608677 401 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC103591.3-201ENST00000608684 209 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AC244100.1-202ENST00000621554 382 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AC092593.1-201ENST00000515413 1815 ntBASIC3.27□□□□□ -1.89
USP28Q96RU2 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.27□□□□□ -1.89
USP28Q96RU2 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.27□□□□□ -1.89
USP28Q96RU2 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
USP28Q96RU2 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USP28Q96RU2 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USP28Q96RU2 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USP28Q96RU2 SNORA38.1-201ENST00000364172 131 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.26□□□□□ -1.89
USP28Q96RU2 HMGB1P11-201ENST00000413899 637 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 RPL21P32-201ENST00000419877 477 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 HSPE1P1-201ENST00000421494 318 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC006366.1-201ENST00000422002 759 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AL512649.1-201ENST00000428997 581 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 RSU1P2-202ENST00000437884 485 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.26□□□□□ -1.89
USP28Q96RU2 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.26□□□□□ -1.89
USP28Q96RU2 HSPE1P28-201ENST00000443139 211 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC112653.1-201ENST00000443851 386 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.26□□□□□ -1.89
USP28Q96RU2 MTCO2P7-201ENST00000446518 666 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 COX6CP12-201ENST00000446748 202 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 SNRPGP9-201ENST00000456025 225 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.26□□□□□ -1.89
USP28Q96RU2 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.26□□□□□ -1.89
USP28Q96RU2 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 RPL21P129-201ENST00000491732 478 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.26□□□□□ -1.89
USP28Q96RU2 MTCO3P7-201ENST00000510008 774 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 Y_RNA.655-201ENST00000515919 96 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USP28Q96RU2 AC024224.1-201ENST00000538284 609 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC006362.1-201ENST00000567392 174 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC053481.3-201ENST00000577881 843 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 MIR1254-2-201ENST00000579553 63 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 MIR544B-201ENST00000582372 78 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.26□□□□□ -1.89
USP28Q96RU2 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.26□□□□□ -1.89
USP28Q96RU2 AC012493.2-201ENST00000595083 291 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 BNIP3P23-201ENST00000599655 511 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 BDH2P1-201ENST00000602288 736 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC064872.1-201ENST00000604823 1072 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
USP28Q96RU2 AC092140.2-201ENST00000618027 521 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.26□□□□□ -1.89
USP28Q96RU2 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 AC040168.1-201ENST00000623594 991 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.26□□□□□ -1.89
USP28Q96RU2 AC090582.1-201ENST00000636321 199 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
USP28Q96RU2 AC244517.1-201ENST00000606030 2086 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.26□□□□□ -1.89
USP28Q96RU2 NUP58P1-201ENST00000502546 1738 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP28Q96RU2 RNU6-501P-201ENST00000364072 100 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
USP28Q96RU2 Y_RNA.553-201ENST00000384670 102 ntBASIC3.25□□□□□ -1.89
USP28Q96RU2 SNORA48.7-201ENST00000391302 135 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms